RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 DBNDD1Q9H9R9 158 aa24.06■■□□□ 1.44
CLN3-250ENST00000636839 CHD4Q14839 1912 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 KIF13BQ9NQT8 1826 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 BECN1Q14457 450 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 WDR66Q8TBY9 1149 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 SNX21Q969T3 373 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 FGAP02671 866 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 DYNLL1P63167 89 aaKnown RBP24.05■■□□□ 1.44
CLN3-250ENST00000636839 GTF2IP78347 998 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 JAKMIP1Q96N16 626 aaKnown RBP24.05■■□□□ 1.44
CLN3-250ENST00000636839 MXD3Q9BW11 206 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 COA1Q9GZY4 146 aa24.05■■□□□ 1.44
CLN3-250ENST00000636839 ZBTB22O15209 634 aa24.04■■□□□ 1.44
CLN3-250ENST00000636839 TGFB2P61812 414 aa24.04■■□□□ 1.44
CLN3-250ENST00000636839 RTFDC1Q9BY42 306 aaPredicted RBP24.04■■□□□ 1.44
CLN3-250ENST00000636839 DAXXQ9UER7 740 aaPredicted RBP24.04■■□□□ 1.44
CLN3-250ENST00000636839 DLEC1Q9Y238 1755 aa24.04■■□□□ 1.44
CLN3-250ENST00000636839 FBXW7Q969H0 707 aa24.03■■□□□ 1.44
CLN3-250ENST00000636839 SALL1Q9NSC2 1324 aa24.03■■□□□ 1.44
CLN3-250ENST00000636839 APPP05067 770 aa24.03■■□□□ 1.44
CLN3-250ENST00000636839 ZKSCAN1P17029 563 aaPredicted RBP24.03■■□□□ 1.44
CLN3-250ENST00000636839 CASTP20810 708 aaKnown RBP24.03■■□□□ 1.44
CLN3-250ENST00000636839 DIXDC1Q155Q3 683 aa24.03■■□□□ 1.44
CLN3-250ENST00000636839 AOC3Q16853 763 aa24.03■■□□□ 1.44
CLN3-250ENST00000636839 HSCBQ8IWL3 235 aa24.03■■□□□ 1.44
CLN3-250ENST00000636839 EYA3Q99504 573 aa24.03■■□□□ 1.44
CLN3-250ENST00000636839 KIAA1551Q9HCM1 1747 aa24.02■■□□□ 1.44
CLN3-250ENST00000636839 LDHBP07195 334 aaKnown RBP24.02■■□□□ 1.44
CLN3-250ENST00000636839 HAND2P61296 217 aa24.02■■□□□ 1.44
CLN3-250ENST00000636839 MFSD14BQ5SR56 506 aa24.02■■□□□ 1.44
CLN3-250ENST00000636839 STOX1Q6ZVD7 989 aa24.02■■□□□ 1.44
CLN3-250ENST00000636839 PIM2Q9P1W9 311 aa24.02■■□□□ 1.44
CLN3-250ENST00000636839 NOL8Q76FK4 1167 aaKnown RBP24.01■■□□□ 1.43
CLN3-250ENST00000636839 RIOK1Q9BRS2 568 aaKnown RBP24.01■■□□□ 1.43
CLN3-250ENST00000636839 UTRNP46939 3433 aa24.01■■□□□ 1.43
CLN3-250ENST00000636839 MAGEB6P1A0A0J9YX57 407 aa24.01■■□□□ 1.43
CLN3-250ENST00000636839 RNF20Q5VTR2 975 aa24.01■■□□□ 1.43
CLN3-250ENST00000636839 DZIP1Q86YF9 867 aaKnown RBP24.01■■□□□ 1.43
CLN3-250ENST00000636839 LARP6Q9BRS8 491 aaKnown RBP24.01■■□□□ 1.43
CLN3-250ENST00000636839 EPB41L4AQ9HCS5 686 aaPredicted RBP24.01■■□□□ 1.43
CLN3-250ENST00000636839 G3V3G9 751 aa24■■□□□ 1.43
CLN3-250ENST00000636839 DCAF8Q5TAQ9 597 aa24■■□□□ 1.43
CLN3-250ENST00000636839 GSG1L2A8MUP6 293 aa24■■□□□ 1.43
CLN3-250ENST00000636839 SPTY2D1Q68D10 685 aaPredicted RBP24■■□□□ 1.43
CLN3-250ENST00000636839 CERS5Q8N5B7 392 aa24■■□□□ 1.43
CLN3-250ENST00000636839 NLGN2Q8NFZ4 835 aa24■■□□□ 1.43
CLN3-250ENST00000636839 TCEANC2Q96MN5 208 aa24■■□□□ 1.43
CLN3-250ENST00000636839 AATFQ9NY61 560 aaKnown RBP eCLIP24■■□□□ 1.43
CLN3-250ENST00000636839 SLC4A4Q9Y6R1 1079 aa24■■□□□ 1.43
CLN3-250ENST00000636839 TSGA10IPQ3SY00 556 aa23.99■■□□□ 1.43
CLN3-250ENST00000636839 CCDC93Q567U6 631 aa23.99■■□□□ 1.43
CLN3-250ENST00000636839 CC2D2BQ6DHV5 1058 aa23.99■■□□□ 1.43
CLN3-250ENST00000636839 ZGPATQ8N5A5 531 aaKnown RBP23.99■■□□□ 1.43
CLN3-250ENST00000636839 SDR42E1Q8WUS8 393 aa23.99■■□□□ 1.43
CLN3-250ENST00000636839 FAM205AQ6ZU69 1335 aa23.99■■□□□ 1.43
CLN3-250ENST00000636839 PATL2C9JE40 543 aaKnown RBP23.98■■□□□ 1.43
CLN3-250ENST00000636839 ST18O60284 1047 aa23.98■■□□□ 1.43
CLN3-250ENST00000636839 ZSWIM6Q9HCJ5 1215 aa23.98■■□□□ 1.43
CLN3-250ENST00000636839 ZNF277Q9NRM2 450 aaPredicted RBP23.98■■□□□ 1.43
CLN3-250ENST00000636839 RPAP1Q9BWH6 1393 aaPredicted RBP23.98■■□□□ 1.43
CLN3-250ENST00000636839 DALRD3Q5D0E6 543 aaKnown RBP23.98■■□□□ 1.43
CLN3-250ENST00000636839 CD2APQ9Y5K6 639 aa23.98■■□□□ 1.43
CLN3-250ENST00000636839 F8W031 263 aaPredicted RBP23.97■■□□□ 1.43
CLN3-250ENST00000636839 K7ELQ4 463 aaPredicted RBP23.97■■□□□ 1.43
CLN3-250ENST00000636839 ECE2O60344 883 aa23.97■■□□□ 1.43
CLN3-250ENST00000636839 IFNL3Q8IZI9 196 aa23.97■■□□□ 1.43
CLN3-250ENST00000636839 TTC14Q96N46 770 aa23.97■■□□□ 1.43
CLN3-250ENST00000636839 NBPF3Q9H094 633 aa23.97■■□□□ 1.43
CLN3-250ENST00000636839 FOXD4L1Q9NU39 408 aa23.97■■□□□ 1.43
CLN3-250ENST00000636839 PPIP5K2O43314 1243 aa23.96■■□□□ 1.43
CLN3-250ENST00000636839 KIAA2012Q0VF49 1180 aa23.96■■□□□ 1.43
CLN3-250ENST00000636839 RTKN2Q8IZC4 609 aa23.96■■□□□ 1.43
CLN3-250ENST00000636839 TM6SF1Q9BZW5 370 aa23.96■■□□□ 1.43
CLN3-250ENST00000636839 E7EWF7 191 aa23.95■■□□□ 1.42
CLN3-250ENST00000636839 SMIM22K7EJ46 135 aa23.95■■□□□ 1.42
CLN3-250ENST00000636839 RUFY3Q7L099 469 aa23.95■■□□□ 1.42
CLN3-250ENST00000636839 INCENPQ9NQS7 918 aa23.95■■□□□ 1.42
CLN3-250ENST00000636839 CTNNA3Q9UI47 895 aa23.95■■□□□ 1.42
CLN3-250ENST00000636839 PODNQ7Z5L7 613 aa23.94■■□□□ 1.42
CLN3-250ENST00000636839 NKX2-3Q8TAU0 364 aa23.94■■□□□ 1.42
CLN3-250ENST00000636839 SLKQ9H2G2 1235 aaPredicted RBP23.94■■□□□ 1.42
CLN3-250ENST00000636839 CYP46A1Q9Y6A2 500 aa23.94■■□□□ 1.42
CLN3-250ENST00000636839 YDJCA8MPS7 323 aa23.94■■□□□ 1.42
CLN3-250ENST00000636839 AK2P54819 239 aa23.94■■□□□ 1.42
CLN3-250ENST00000636839 TBC1D22AQ8WUA7 517 aa23.94■■□□□ 1.42
CLN3-250ENST00000636839 BCS1LQ9Y276 419 aa23.94■■□□□ 1.42
CLN3-250ENST00000636839 IMMTQ16891 758 aaKnown RBP23.93■■□□□ 1.42
CLN3-250ENST00000636839 NEK1Q96PY6 1258 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 SPON1Q9HCB6 807 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 PDRG1Q9NUG6 133 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 SCN9AQ15858 1988 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 ZNF213O14771 459 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 BLOC1S2Q6QNY1 142 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 SUPT20HQ8NEM7 779 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 PSMD1Q99460 953 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 NAPBQ9H115 298 aa23.93■■□□□ 1.42
CLN3-250ENST00000636839 CCDC88AQ3V6T2 1871 aa23.92■■□□□ 1.42
CLN3-250ENST00000636839 COL4A5P29400 1685 aa23.92■■□□□ 1.42
CLN3-250ENST00000636839 PSMA5P28066 241 aa23.92■■□□□ 1.42
CLN3-250ENST00000636839 ALX1Q15699 326 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms