RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 KRT27Q7Z3Y8 459 aa23.2■■□□□ 1.3
PCDHB11-202ENST00000624887 BCL11BQ9C0K0 894 aaPredicted RBP23.2■■□□□ 1.3
PCDHB11-202ENST00000624887 GPHNQ9NQX3 736 aaPredicted RBP23.2■■□□□ 1.3
PCDHB11-202ENST00000624887 TRDNQ13061 729 aa23.19■■□□□ 1.3
PCDHB11-202ENST00000624887 BICDL1Q6ZP65 573 aa23.19■■□□□ 1.3
PCDHB11-202ENST00000624887 NYXQ9GZU5 481 aa23.19■■□□□ 1.3
PCDHB11-202ENST00000624887 CCNL1Q9UK58 526 aaPredicted RBP23.19■■□□□ 1.3
PCDHB11-202ENST00000624887 SMIM5Q71RC9 77 aa23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 COL24A1Q17RW2 1714 aa23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 ZNF804BA4D1E1 1349 aa23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 PATL2C9JE40 543 aaKnown RBP23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 GTF2E1P29083 439 aaPredicted RBP23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 RBM6P78332 1123 aaKnown RBP23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 UBE4AQ14139 1066 aa23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 FAM196AQ6ZSG2 479 aa23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 TBC1D10CQ8IV04 446 aa23.18■■□□□ 1.3
PCDHB11-202ENST00000624887 TAF1P21675 1872 aa23.17■■□□□ 1.3
PCDHB11-202ENST00000624887 GNPATO15228 680 aa23.17■■□□□ 1.3
PCDHB11-202ENST00000624887 SETDB2Q96T68 719 aa23.17■■□□□ 1.3
PCDHB11-202ENST00000624887 MBD4O95243 580 aa23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 TPRNQ4KMQ1 711 aa23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 LEO1Q8WVC0 666 aaPredicted RBP23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 TRIM44Q96DX7 344 aaPredicted RBP23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 SPATA32Q96LK8 384 aa23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 SRP68Q9UHB9 627 aaKnown RBP23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 KLF18A0A0U1RQI7 1052 aa23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 LY75O60449 1722 aa23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 ZPR1O75312 459 aa23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 TFIP11Q9UBB9 837 aaKnown RBP23.16■■□□□ 1.3
PCDHB11-202ENST00000624887 TAF1LQ8IZX4 1826 aa23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 DHX16O60231 1041 aaKnown RBP23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 IFNL3Q8IZI9 196 aa23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 MINPP1Q9UNW1 487 aa23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 HPS5Q9UPZ3 1129 aa23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 RTCBQ9Y3I0 505 aaKnown RBP23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 CARMIL3Q8ND23 1372 aa23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 PNPLA7Q6ZV29 1317 aa23.15■■□□□ 1.3
PCDHB11-202ENST00000624887 EPB41L4AQ9HCS5 686 aaPredicted RBP23.14■■□□□ 1.3
PCDHB11-202ENST00000624887 RRAGDQ9NQL2 400 aaPredicted RBP23.14■■□□□ 1.3
PCDHB11-202ENST00000624887 GOLGA8BA8MQT2 603 aa23.14■■□□□ 1.29
PCDHB11-202ENST00000624887 GNAT2P19087 354 aa23.14■■□□□ 1.29
PCDHB11-202ENST00000624887 ARMT1Q9H993 441 aa23.14■■□□□ 1.29
PCDHB11-202ENST00000624887 GNL3LQ9NVN8 582 aaKnown RBP23.14■■□□□ 1.29
PCDHB11-202ENST00000624887 CFAP45Q9UL16 551 aa23.14■■□□□ 1.29
PCDHB11-202ENST00000624887 MYH15Q9Y2K3 1946 aa23.14■■□□□ 1.29
PCDHB11-202ENST00000624887 BRWD3Q6RI45 1802 aa23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 FDPSP14324 419 aaKnown RBP23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 NBPF5PQ86XG9 351 aaPredicted RBP23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 CELF1Q92879 486 aaKnown RBP23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 PDLIM2Q96JY6 352 aa23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 NLRP3Q96P20 1036 aa23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 NAPBQ9H115 298 aa23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 LRP2BPQ9P2M1 347 aa23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 DENND2AQ9ULE3 1009 aa23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 ANGEL1Q9UNK9 670 aaKnown RBP23.13■■□□□ 1.29
PCDHB11-202ENST00000624887 GSG1L2A8MUP6 293 aa23.12■■□□□ 1.29
PCDHB11-202ENST00000624887 CYB5R4Q7L1T6 521 aa23.12■■□□□ 1.29
PCDHB11-202ENST00000624887 RNF214Q8ND24 703 aa23.12■■□□□ 1.29
PCDHB11-202ENST00000624887 GYG1P46976 350 aa23.12■■□□□ 1.29
PCDHB11-202ENST00000624887 CAVIN4Q5BKX8 364 aa23.11■■□□□ 1.29
PCDHB11-202ENST00000624887 TPTE2Q6XPS3 522 aa23.11■■□□□ 1.29
PCDHB11-202ENST00000624887 NKX2-3Q8TAU0 364 aa23.11■■□□□ 1.29
PCDHB11-202ENST00000624887 ARHGEF1Q92888 912 aaKnown RBP23.11■■□□□ 1.29
PCDHB11-202ENST00000624887 CHD4Q14839 1912 aa23.11■■□□□ 1.29
PCDHB11-202ENST00000624887 TIAM2Q8IVF5 1701 aa23.11■■□□□ 1.29
PCDHB11-202ENST00000624887 GOLGA6L4A6NEF3 574 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 B4E1Z4 1266 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 SH2B2O14492 632 aaPredicted RBP23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 ADD1P35611 737 aaKnown RBP23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 AMIGO3Q86WK7 504 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 LCORLQ8N3X6 602 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 TMEM87BQ96K49 555 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 NEDD4P46934 1319 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 FOSBP53539 338 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 RPS8P62241 208 aaKnown RBP23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 ATL3Q6DD88 541 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 FUCA2Q9BTY2 467 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 NACAP1Q9BZK3 213 aa23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 IQSEC3Q9UPP2 1182 aaPredicted RBP23.1■■□□□ 1.29
PCDHB11-202ENST00000624887 WTIPA6NIX2 430 aaPredicted RBP23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 LIG1P18858 919 aa23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 SLC4A4Q9Y6R1 1079 aa23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 COL1A1P02452 1464 aaPredicted RBP23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 C4AP0C0L4 1744 aa23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 C4BP0C0L5 1744 aa23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 PPFIA3O75145 1194 aa23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 GIMAP6Q6P9H5 292 aa23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 FAM84BQ96KN1 310 aaPredicted RBP23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 CNNM2Q9H8M5 875 aa23.09■■□□□ 1.29
PCDHB11-202ENST00000624887 ESPNB1AK53 854 aa23.08■■□□□ 1.29
PCDHB11-202ENST00000624887 CPLX1O14810 134 aa23.08■■□□□ 1.29
PCDHB11-202ENST00000624887 PRKAB2O43741 272 aa23.08■■□□□ 1.29
PCDHB11-202ENST00000624887 TRIM37O94972 964 aa23.08■■□□□ 1.29
PCDHB11-202ENST00000624887 IGDCC4Q8TDY8 1250 aa23.08■■□□□ 1.29
PCDHB11-202ENST00000624887 PGBD1Q96JS3 809 aa23.08■■□□□ 1.29
PCDHB11-202ENST00000624887 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.08■■□□□ 1.29
PCDHB11-202ENST00000624887 CYP7A1P22680 504 aa23.07■■□□□ 1.28
PCDHB11-202ENST00000624887 UVSSAQ2YD98 709 aa23.07■■□□□ 1.28
PCDHB11-202ENST00000624887 AKNAD1Q5T1N1 836 aa23.07■■□□□ 1.28
PCDHB11-202ENST00000624887 VPS37DQ86XT2 251 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms