RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 RALYLQ86SE5 291 aaKnown RBP25.06■■□□□ 1.6
LIME1-210ENST00000621325 ARMT1Q9H993 441 aa25.06■■□□□ 1.6
LIME1-210ENST00000621325 BSDC1Q9NW68 430 aaPredicted RBP25.06■■□□□ 1.6
LIME1-210ENST00000621325 TFIP11Q9UBB9 837 aaKnown RBP25.06■■□□□ 1.6
LIME1-210ENST00000621325 NBPF5PQ86XG9 351 aaPredicted RBP25.06■■□□□ 1.6
LIME1-210ENST00000621325 EPB41L4AQ9HCS5 686 aaPredicted RBP25.06■■□□□ 1.6
LIME1-210ENST00000621325 MINPP1Q9UNW1 487 aa25.06■■□□□ 1.6
LIME1-210ENST00000621325 EVCP57679 992 aa25.05■■□□□ 1.6
LIME1-210ENST00000621325 KRT85P78386 507 aa25.05■■□□□ 1.6
LIME1-210ENST00000621325 H3BQV1 296 aa25.05■■□□□ 1.6
LIME1-210ENST00000621325 IFFO2Q5TF58 517 aa25.05■■□□□ 1.6
LIME1-210ENST00000621325 RAB11FIP4Q86YS3 637 aa25.05■■□□□ 1.6
LIME1-210ENST00000621325 DOCK2Q92608 1830 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 RGL2O15211 777 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 CASZ1Q86V15 1759 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 SALL1Q9NSC2 1324 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 PHF14O94880 888 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 RESTQ13127 1097 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 CSPP1Q1MSJ5 1256 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 INCENPQ9NQS7 918 aa25.04■■□□□ 1.6
LIME1-210ENST00000621325 PRKAB2O43741 272 aa25.03■■□□□ 1.6
LIME1-210ENST00000621325 KLF18A0A0U1RQI7 1052 aa25.03■■□□□ 1.6
LIME1-210ENST00000621325 CYB5R4Q7L1T6 521 aa25.03■■□□□ 1.6
LIME1-210ENST00000621325 NYXQ9GZU5 481 aa25.03■■□□□ 1.6
LIME1-210ENST00000621325 LRP2BPQ9P2M1 347 aa25.03■■□□□ 1.6
LIME1-210ENST00000621325 HPS5Q9UPZ3 1129 aa25.03■■□□□ 1.6
LIME1-210ENST00000621325 ZNF804BA4D1E1 1349 aa25.02■■□□□ 1.6
LIME1-210ENST00000621325 SEPT12Q8IYM1 358 aa25.02■■□□□ 1.6
LIME1-210ENST00000621325 IFNL3Q8IZI9 196 aa25.02■■□□□ 1.6
LIME1-210ENST00000621325 LCORLQ8N3X6 602 aa25.02■■□□□ 1.6
LIME1-210ENST00000621325 PATL2C9JE40 543 aaKnown RBP25.02■■□□□ 1.6
LIME1-210ENST00000621325 CCDC183Q5T5S1 534 aa25.02■■□□□ 1.6
LIME1-210ENST00000621325 MIGA1Q8NAN2 632 aa25.02■■□□□ 1.6
LIME1-210ENST00000621325 NLRP3Q96P20 1036 aa25.02■■□□□ 1.6
LIME1-210ENST00000621325 CLCN1P35523 988 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 HMGN5P82970 282 aaKnown RBP25.01■■□□□ 1.59
LIME1-210ENST00000621325 UBE4AQ14139 1066 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 CERKQ8TCT0 537 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 COL1A1P02452 1464 aaPredicted RBP25.01■■□□□ 1.59
LIME1-210ENST00000621325 NEDD4P46934 1319 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 FDPSP14324 419 aaKnown RBP25.01■■□□□ 1.59
LIME1-210ENST00000621325 KLRK1P26718 216 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 TRDNQ13061 729 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 RNF214Q8ND24 703 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 ABCF2Q9UG63 623 aa25.01■■□□□ 1.59
LIME1-210ENST00000621325 EP400Q96L91 3159 aa25■■□□□ 1.59
LIME1-210ENST00000621325 GOLGA8BA8MQT2 603 aa25■■□□□ 1.59
LIME1-210ENST00000621325 GSG1L2A8MUP6 293 aa25■■□□□ 1.59
LIME1-210ENST00000621325 B4E1Z4 1266 aa25■■□□□ 1.59
LIME1-210ENST00000621325 ADGRA1Q86SQ6 560 aa25■■□□□ 1.59
LIME1-210ENST00000621325 RPS8P62241 208 aaKnown RBP25■■□□□ 1.59
LIME1-210ENST00000621325 ALX1Q15699 326 aa25■■□□□ 1.59
LIME1-210ENST00000621325 TPTE2Q6XPS3 522 aa25■■□□□ 1.59
LIME1-210ENST00000621325 LRRC4BQ9NT99 713 aa25■■□□□ 1.59
LIME1-210ENST00000621325 TACC3Q9Y6A5 838 aa25■■□□□ 1.59
LIME1-210ENST00000621325 A0A1B0GUL6 1792 aa24.99■■□□□ 1.59
LIME1-210ENST00000621325 GUCY1B3Q02153 619 aa24.99■■□□□ 1.59
LIME1-210ENST00000621325 CTDSPL2Q05D32 466 aa24.99■■□□□ 1.59
LIME1-210ENST00000621325 FAM196AQ6ZSG2 479 aa24.99■■□□□ 1.59
LIME1-210ENST00000621325 FAM84BQ96KN1 310 aaPredicted RBP24.99■■□□□ 1.59
LIME1-210ENST00000621325 NAPBQ9H115 298 aa24.99■■□□□ 1.59
LIME1-210ENST00000621325 TSPY26PQ9H489 355 aa24.99■■□□□ 1.59
LIME1-210ENST00000621325 ONECUT3O60422 494 aaPredicted RBP24.98■■□□□ 1.59
LIME1-210ENST00000621325 SENP2Q9HC62 589 aa24.98■■□□□ 1.59
LIME1-210ENST00000621325 TAF1LQ8IZX4 1826 aa24.98■■□□□ 1.59
LIME1-210ENST00000621325 COL24A1Q17RW2 1714 aa24.98■■□□□ 1.59
LIME1-210ENST00000621325 LEO1Q8WVC0 666 aaPredicted RBP24.98■■□□□ 1.59
LIME1-210ENST00000621325 SPATA32Q96LK8 384 aa24.98■■□□□ 1.59
LIME1-210ENST00000621325 ELP1O95163 1332 aa24.98■■□□□ 1.59
LIME1-210ENST00000621325 WDR19Q8NEZ3 1342 aa24.98■■□□□ 1.59
LIME1-210ENST00000621325 LY75O60449 1722 aa24.98■■□□□ 1.59
LIME1-210ENST00000621325 RFC4P35249 363 aa24.97■■□□□ 1.59
LIME1-210ENST00000621325 NAA16Q6N069 864 aaPredicted RBP24.97■■□□□ 1.59
LIME1-210ENST00000621325 SLC4A4Q9Y6R1 1079 aa24.97■■□□□ 1.59
LIME1-210ENST00000621325 SBF2Q86WG5 1849 aa24.97■■□□□ 1.59
LIME1-210ENST00000621325 CARMIL3Q8ND23 1372 aa24.97■■□□□ 1.59
LIME1-210ENST00000621325 CYP7A1P22680 504 aa24.97■■□□□ 1.59
LIME1-210ENST00000621325 SCAND2PQ9GZW5 306 aaPredicted RBP24.97■■□□□ 1.59
LIME1-210ENST00000621325 TRAPPC3LQ5T215 181 aa24.96■■□□□ 1.59
LIME1-210ENST00000621325 SLC51AQ86UW1 340 aa24.96■■□□□ 1.59
LIME1-210ENST00000621325 VPS37DQ86XT2 251 aa24.96■■□□□ 1.59
LIME1-210ENST00000621325 GNL3LQ9NVN8 582 aaKnown RBP24.96■■□□□ 1.59
LIME1-210ENST00000621325 RAI14Q9P0K7 980 aa24.96■■□□□ 1.59
LIME1-210ENST00000621325 TM4SF1P30408 202 aa24.96■■□□□ 1.59
LIME1-210ENST00000621325 CAVIN4Q5BKX8 364 aa24.96■■□□□ 1.59
LIME1-210ENST00000621325 PPP1R9BQ96SB3 815 aa24.96■■□□□ 1.59
LIME1-210ENST00000621325 ZSCAN16Q9H4T2 348 aaPredicted RBP24.96■■□□□ 1.59
LIME1-210ENST00000621325 TRPC5Q9UL62 973 aaPredicted RBP24.96■■□□□ 1.59
LIME1-210ENST00000621325 ANGEL1Q9UNK9 670 aaKnown RBP24.96■■□□□ 1.59
LIME1-210ENST00000621325 CCDC173Q0VFZ6 552 aa24.95■■□□□ 1.59
LIME1-210ENST00000621325 ZMYM6O95789 1325 aa24.95■■□□□ 1.59
LIME1-210ENST00000621325 PNPLA7Q6ZV29 1317 aa24.95■■□□□ 1.59
LIME1-210ENST00000621325 C4BP0C0L5 1744 aa24.95■■□□□ 1.58
LIME1-210ENST00000621325 SH2B2O14492 632 aaPredicted RBP24.95■■□□□ 1.58
LIME1-210ENST00000621325 LIG1P18858 919 aa24.95■■□□□ 1.58
LIME1-210ENST00000621325 KIF3AQ9Y496 699 aa24.95■■□□□ 1.58
LIME1-210ENST00000621325 RXRAP19793 462 aa24.94■■□□□ 1.58
LIME1-210ENST00000621325 ADD1P35611 737 aaKnown RBP24.94■■□□□ 1.58
LIME1-210ENST00000621325 OTUD7BQ6GQQ9 843 aa24.94■■□□□ 1.58
LIME1-210ENST00000621325 GIMAP6Q6P9H5 292 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms