RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 MTMR6Q9Y217 621 aa11.93□□□□□ -0.5
VPS11-207ENST00000620429 FAN1Q9Y2M0 1017 aa11.93□□□□□ -0.5
VPS11-207ENST00000620429 ZBTB12Q9Y330 459 aaPredicted RBP11.93□□□□□ -0.5
VPS11-207ENST00000620429 ABCA3Q99758 1704 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 UBTFL1P0CB47 393 aaPredicted RBP11.92□□□□□ -0.5
VPS11-207ENST00000620429 TAF7Q15545 349 aaPredicted RBP11.92□□□□□ -0.5
VPS11-207ENST00000620429 PREPLQ4J6C6 727 aaPredicted RBP11.92□□□□□ -0.5
VPS11-207ENST00000620429 VPS53Q5VIR6 699 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 CNNM3Q8NE01 707 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 SPG7Q9UQ90 795 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 LTN1O94822 1766 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 SOS1Q07889 1333 aaPredicted RBP11.92□□□□□ -0.5
VPS11-207ENST00000620429 KCNQ3O43525 872 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 URI1O94763 535 aaPredicted RBP11.92□□□□□ -0.5
VPS11-207ENST00000620429 LIG3P49916 1009 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 FBXW10Q5XX13 1052 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 TTC6Q86TZ1 520 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 CABS1Q96KC9 395 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 TEX13AQ9BXU3 409 aaPredicted RBP11.92□□□□□ -0.5
VPS11-207ENST00000620429 EPC1Q9H2F5 836 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 DACT1Q9NYF0 836 aa11.92□□□□□ -0.5
VPS11-207ENST00000620429 ICA1Q05084 483 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 AP1ARQ63HQ0 302 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 HOMER1Q86YM7 354 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 CNTROBQ8N137 903 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 N4BP2L2Q92802 583 aaPredicted RBP11.91□□□□□ -0.5
VPS11-207ENST00000620429 SH3GL3Q99963 347 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 NUCKS1Q9H1E3 243 aaKnown RBP11.91□□□□□ -0.5
VPS11-207ENST00000620429 AXIN2Q9Y2T1 843 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 CHUKO15111 745 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 RTN2O75298 545 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 USP5P45974 858 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 BEND6Q5SZJ8 279 aaPredicted RBP11.91□□□□□ -0.5
VPS11-207ENST00000620429 PI4K2BQ8TCG2 481 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 USP44Q9H0E7 712 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 SLC24A3Q9HC58 644 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 HYPKQ9NX55 129 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 USP54Q70EL1 1684 aa11.91□□□□□ -0.5
VPS11-207ENST00000620429 NRDCO43847 1150 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 NF2P35240 595 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 TXLNAP40222 546 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 MAP3K9P80192 1104 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 ZNF483Q8TF39 744 aaPredicted RBP11.9□□□□□ -0.5
VPS11-207ENST00000620429 MPHOSPH8Q99549 860 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 BICC1Q9H694 974 aaKnown RBP11.9□□□□□ -0.5
VPS11-207ENST00000620429 PLCH1Q4KWH8 1693 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 GLI3P10071 1580 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 KRT85P78386 507 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 WLSQ5T9L3 541 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 MPRIPQ6WCQ1 1025 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 KRT28Q7Z3Y7 464 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 PPP1R42Q7Z4L9 355 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 ARHGEF25Q86VW2 580 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 KCNH5Q8NCM2 988 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 RHPN1Q8TCX5 695 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 SSH3Q8TE77 659 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 JAKMIP1Q96N16 626 aaKnown RBP11.9□□□□□ -0.5
VPS11-207ENST00000620429 PHAXQ9H814 394 aaKnown RBP11.9□□□□□ -0.5
VPS11-207ENST00000620429 LRRC37A3O60309 1634 aa11.9□□□□□ -0.5
VPS11-207ENST00000620429 FANCGO15287 622 aa11.89□□□□□ -0.51
VPS11-207ENST00000620429 RAB11FIP3O75154 756 aa11.89□□□□□ -0.51
VPS11-207ENST00000620429 EIF2S2P20042 333 aaKnown RBP11.89□□□□□ -0.51
VPS11-207ENST00000620429 GOLGA1Q92805 767 aa11.89□□□□□ -0.51
VPS11-207ENST00000620429 ZKSCAN4Q969J2 545 aaPredicted RBP11.89□□□□□ -0.51
VPS11-207ENST00000620429 SYTL4Q96C24 671 aaPredicted RBP11.89□□□□□ -0.51
VPS11-207ENST00000620429 ARID4AP29374 1257 aaPredicted RBP11.89□□□□□ -0.51
VPS11-207ENST00000620429 RDXP35241 583 aaKnown RBP11.89□□□□□ -0.51
VPS11-207ENST00000620429 ZC3H6P61129 1189 aaKnown RBP11.89□□□□□ -0.51
VPS11-207ENST00000620429 CCDC26Q8TAB7 109 aa11.89□□□□□ -0.51
VPS11-207ENST00000620429 GJD4Q96KN9 370 aaPredicted RBP11.89□□□□□ -0.51
VPS11-207ENST00000620429 ACBD3Q9H3P7 528 aa11.89□□□□□ -0.51
VPS11-207ENST00000620429 ANKRD18BA2A2Z9 1011 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 RWDD2BP57060 319 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 PPP2R3AQ06190 1150 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 ZNF530Q6P9A1 599 aaPredicted RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 FERMT3Q86UX7 667 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 ARMC2Q8NEN0 867 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 DDX54Q8TDD1 881 aaKnown RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 ERCC4Q92889 916 aaPredicted RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 XAGE2Q96GT9 111 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 ZSCAN31Q96LW9 406 aaPredicted RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 PAIP2Q9BPZ3 127 aaKnown RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 SH2B1Q9NRF2 756 aaPredicted RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 L1RE1Q9UN81 338 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 FAM169AQ9Y6X4 670 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 RGPD2P0DJD1 1756 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 SPATA31A3Q5VYP0 1347 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 ATXN2Q99700 1313 aaKnown RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 TNS3Q68CZ2 1445 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 N4BP1O75113 896 aaKnown RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 ANXA1P04083 346 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 TRAF1Q13077 416 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 GNL2Q13823 731 aaKnown RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 ADCK5Q3MIX3 580 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 HSP90B2PQ58FF3 399 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 PRPF40BQ6NWY9 871 aaKnown RBP11.88□□□□□ -0.51
VPS11-207ENST00000620429 NECAB1Q8N987 351 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 ANKRD24Q8TF21 1146 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 RAB21Q9UL25 225 aa11.88□□□□□ -0.51
VPS11-207ENST00000620429 MRFAP1Q9Y605 127 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms