RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 TEKT1Q969V4 418 aa18.93■□□□□ 0.62
TRIM28-203ENST00000593582 ZIC5Q96T25 663 aa18.93■□□□□ 0.62
TRIM28-203ENST00000593582 AKAP2Q9Y2D5 859 aa18.93■□□□□ 0.62
TRIM28-203ENST00000593582 MAST3O60307 1309 aa18.93■□□□□ 0.62
TRIM28-203ENST00000593582 SUPT20HL1Q3ZLR7 823 aa18.92■□□□□ 0.62
TRIM28-203ENST00000593582 SPDYE2Q495Y8 402 aa18.92■□□□□ 0.62
TRIM28-203ENST00000593582 TDRD3Q9H7E2 651 aaKnown RBP18.92■□□□□ 0.62
TRIM28-203ENST00000593582 AOX1Q06278 1338 aa18.92■□□□□ 0.62
TRIM28-203ENST00000593582 ARAP2Q8WZ64 1704 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 PNMA6EA0A0J9YXQ4 647 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 RLBP1P12271 317 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 KIF23Q02241 960 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-203ENST00000593582 TFCP2Q12800 502 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 PRKG1Q13976 671 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 RASA3Q14644 834 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 RASAL3Q86YV0 1011 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 MRIQ9BWK5 157 aa18.91■□□□□ 0.62
TRIM28-203ENST00000593582 ZNF70Q9UC06 446 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-203ENST00000593582 SEMA3EO15041 775 aa18.9■□□□□ 0.62
TRIM28-203ENST00000593582 PPP1R12BO60237 982 aaPredicted RBP18.9■□□□□ 0.62
TRIM28-203ENST00000593582 ADORA1P30542 326 aa18.9■□□□□ 0.62
TRIM28-203ENST00000593582 PHKA1P46020 1223 aa18.9■□□□□ 0.62
TRIM28-203ENST00000593582 TIMM10P62072 90 aa18.9■□□□□ 0.62
TRIM28-203ENST00000593582 G3BP1Q13283 466 aaKnown RBP eCLIP18.9■□□□□ 0.622e-9■□□□□ 11.3
TRIM28-203ENST00000593582 DENND2AQ9ULE3 1009 aa18.9■□□□□ 0.62
TRIM28-203ENST00000593582 ANGEL1Q9UNK9 670 aaKnown RBP18.9■□□□□ 0.62
TRIM28-203ENST00000593582 A0A1B0GUL7 405 aa18.89■□□□□ 0.61
TRIM28-203ENST00000593582 TNNI2P48788 182 aa18.89■□□□□ 0.61
TRIM28-203ENST00000593582 CCDC102BQ68D86 513 aa18.89■□□□□ 0.61
TRIM28-203ENST00000593582 REM2Q8IYK8 340 aaPredicted RBP18.89■□□□□ 0.61
TRIM28-203ENST00000593582 ZDHHC15Q96MV8 337 aa18.89■□□□□ 0.61
TRIM28-203ENST00000593582 TSKSQ9UJT2 592 aa18.89■□□□□ 0.61
TRIM28-203ENST00000593582 ECM29Q5VYK3 1845 aa18.88■□□□□ 0.61
TRIM28-203ENST00000593582 ZBTB7BO15156 539 aaPredicted RBP18.88■□□□□ 0.61
TRIM28-203ENST00000593582 MS4A1P11836 297 aa18.88■□□□□ 0.61
TRIM28-203ENST00000593582 MVPQ14764 893 aaKnown RBP18.88■□□□□ 0.61
TRIM28-203ENST00000593582 NBPF12Q5TAG4 269 aaPredicted RBP18.88■□□□□ 0.61
TRIM28-203ENST00000593582 HHIPL2Q6UWX4 724 aa18.88■□□□□ 0.61
TRIM28-203ENST00000593582 TCP10L2B9ZVM9 353 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 ZBTB22O15209 634 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 ATP8B2P98198 1209 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 POLA2Q14181 598 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 LDLRAD1Q5T700 205 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 ZGPATQ8N5A5 531 aaKnown RBP18.87■□□□□ 0.61
TRIM28-203ENST00000593582 XAGE2Q96GT9 111 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 NEUROD6Q96NK8 337 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 CSRNP1Q96S65 589 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 C1orf115Q9H7X2 142 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 TMOD2Q9NZR1 351 aa18.87■□□□□ 0.61
TRIM28-203ENST00000593582 SALL1Q9NSC2 1324 aa18.86■□□□□ 0.61
TRIM28-203ENST00000593582 LDHBP07195 334 aaKnown RBP18.86■□□□□ 0.61
TRIM28-203ENST00000593582 MAP3K11Q16584 847 aa18.86■□□□□ 0.61
TRIM28-203ENST00000593582 GORABQ5T7V8 394 aa18.86■□□□□ 0.61
TRIM28-203ENST00000593582 APOBEC3HQ6NTF7 200 aaKnown RBP18.86■□□□□ 0.61
TRIM28-203ENST00000593582 PANK1Q8TE04 598 aa18.86■□□□□ 0.61
TRIM28-203ENST00000593582 SSH3Q8TE77 659 aa18.86■□□□□ 0.61
TRIM28-203ENST00000593582 SAGE1Q9NXZ1 904 aa18.86■□□□□ 0.61
TRIM28-203ENST00000593582 FZD1Q9UP38 647 aa18.86■□□□□ 0.61
TRIM28-203ENST00000593582 PRDX5P30044 214 aa18.85■□□□□ 0.61
TRIM28-203ENST00000593582 IREB2P48200 963 aaKnown RBP18.85■□□□□ 0.61
TRIM28-203ENST00000593582 OS9Q13438 667 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-203ENST00000593582 RASGRF1Q13972 1273 aa18.85■□□□□ 0.61
TRIM28-203ENST00000593582 SLC10A4Q96EP9 437 aa18.85■□□□□ 0.61
TRIM28-203ENST00000593582 SSC5DA1L4H1 1573 aa18.85■□□□□ 0.61
TRIM28-203ENST00000593582 PDS5AQ29RF7 1337 aaKnown RBP18.84■□□□□ 0.61
TRIM28-203ENST00000593582 UNCXA6NJT0 531 aa18.84■□□□□ 0.61
TRIM28-203ENST00000593582 FKBP1CQ5VVH2 108 aa18.84■□□□□ 0.61
TRIM28-203ENST00000593582 TMEM39BQ9GZU3 492 aa18.84■□□□□ 0.61
TRIM28-203ENST00000593582 RNF186Q9NXI6 227 aa18.84■□□□□ 0.61
TRIM28-203ENST00000593582 RCAN3Q9UKA8 241 aa18.84■□□□□ 0.61
TRIM28-203ENST00000593582 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-203ENST00000593582 MYH13Q9UKX3 1938 aa18.83■□□□□ 0.6
TRIM28-203ENST00000593582 SURF6O75683 361 aaKnown RBP18.83■□□□□ 0.6
TRIM28-203ENST00000593582 TRPA1O75762 1119 aa18.83■□□□□ 0.6
TRIM28-203ENST00000593582 CACNB3P54284 484 aa18.83■□□□□ 0.6
TRIM28-203ENST00000593582 MKRN3Q13064 507 aaKnown RBP18.83■□□□□ 0.6
TRIM28-203ENST00000593582 DIXDC1Q155Q3 683 aa18.83■□□□□ 0.6
TRIM28-203ENST00000593582 TEPSINQ96N21 525 aa18.83■□□□□ 0.6
TRIM28-203ENST00000593582 USP2O75604 605 aaPredicted RBP18.82■□□□□ 0.6
TRIM28-203ENST00000593582 SPTY2D1Q68D10 685 aaPredicted RBP18.82■□□□□ 0.6
TRIM28-203ENST00000593582 FAM83AQ86UY5 434 aa18.82■□□□□ 0.6
TRIM28-203ENST00000593582 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.82■□□□□ 0.6
TRIM28-203ENST00000593582 ABCF2Q9UG63 623 aa18.82■□□□□ 0.6
TRIM28-203ENST00000593582 DAGLAQ9Y4D2 1042 aa18.82■□□□□ 0.6
TRIM28-203ENST00000593582 SREBF2Q12772 1141 aa18.81■□□□□ 0.6
TRIM28-203ENST00000593582 SPRYD7Q5W111 196 aa18.81■□□□□ 0.6
TRIM28-203ENST00000593582 DZIP1Q86YF9 867 aaKnown RBP18.81■□□□□ 0.6
TRIM28-203ENST00000593582 ANKRD13AQ8IZ07 590 aa18.81■□□□□ 0.6
TRIM28-203ENST00000593582 CLMNQ96JQ2 1002 aa18.81■□□□□ 0.6
TRIM28-203ENST00000593582 GPR108Q9NPR9 543 aa18.81■□□□□ 0.6
TRIM28-203ENST00000593582 TM4SF4P48230 202 aa18.8■□□□□ 0.6
TRIM28-203ENST00000593582 CEP85Q6P2H3 762 aa18.8■□□□□ 0.6
TRIM28-203ENST00000593582 CDAN1Q8IWY9 1227 aa18.8■□□□□ 0.6
TRIM28-203ENST00000593582 SLF2Q8IX21 1173 aa18.8■□□□□ 0.6
TRIM28-203ENST00000593582 HOOK2Q96ED9 719 aa18.8■□□□□ 0.6
TRIM28-203ENST00000593582 NOP58Q9Y2X3 529 aaKnown RBP18.8■□□□□ 0.6
TRIM28-203ENST00000593582 CAPN15O75808 1086 aa18.79■□□□□ 0.6
TRIM28-203ENST00000593582 ZBTB48P10074 688 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-203ENST00000593582 TNNI3KQ59H18 835 aa18.79■□□□□ 0.6
TRIM28-203ENST00000593582 CDC42EP5Q6NZY7 148 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms