RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 ZNF589Q86UQ0 364 aaPredicted RBP11.3□□□□□ -0.6
VPS25-205ENST00000590339 MAP4K1Q92918 833 aa11.3□□□□□ -0.6
VPS25-205ENST00000590339 CNNM1Q9NRU3 951 aa11.3□□□□□ -0.6
VPS25-205ENST00000590339 ADARB2Q9NS39 739 aaKnown RBP11.3□□□□□ -0.6
VPS25-205ENST00000590339 CNOT7Q9UIV1 285 aaKnown RBP11.3□□□□□ -0.6
VPS25-205ENST00000590339 NDUFB9Q9Y6M9 179 aa11.3□□□□□ -0.6
VPS25-205ENST00000590339 GOLIM4O00461 696 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 PSMD14O00487 310 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 ATP2B4P23634 1241 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 ARID4AP29374 1257 aaPredicted RBP11.29□□□□□ -0.6
VPS25-205ENST00000590339 IGHMBP2P38935 993 aaKnown RBP11.29□□□□□ -0.6
VPS25-205ENST00000590339 PUM3Q15397 648 aaKnown RBP11.29□□□□□ -0.6
VPS25-205ENST00000590339 CCDC158Q5M9N0 1113 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 ZMYM1Q5SVZ6 1142 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 USP50Q70EL3 339 aaPredicted RBP11.29□□□□□ -0.6
VPS25-205ENST00000590339 RASEFQ8IZ41 740 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 TTC14Q96N46 770 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 TM6SF1Q9BZW5 370 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 CREBZFQ9NS37 354 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 PODXL2Q9NZ53 605 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 MINPP1Q9UNW1 487 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 RBM8AQ9Y5S9 174 aaKnown RBP11.29□□□□□ -0.6
VPS25-205ENST00000590339 LRRC37AA6NMS7 1700 aa11.29□□□□□ -0.6
VPS25-205ENST00000590339 MAST2Q6P0Q8 1798 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 TMEM88BA6NKF7 163 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 H7C1D1 291 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 TRAF5O00463 557 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 TAF5LO75529 589 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 CUL4AQ13619 759 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 SCARF1Q14162 830 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 TTC39AQ5SRH9 613 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 MICALL2Q8IY33 904 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 LPIN2Q92539 896 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 MPHOSPH8Q99549 860 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 HELLSQ9NRZ9 838 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 BSDC1Q9NW68 430 aaPredicted RBP11.28□□□□□ -0.6
VPS25-205ENST00000590339 MYH13Q9UKX3 1938 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 XDHP47989 1333 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 PASKQ96RG2 1323 aa11.28□□□□□ -0.6
VPS25-205ENST00000590339 DICER1Q9UPY3 1922 aaKnown RBP11.27□□□□□ -0.6
VPS25-205ENST00000590339 NEK4P51957 841 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 HIRAP54198 1017 aaPredicted RBP11.27□□□□□ -0.61
VPS25-205ENST00000590339 NBR1Q14596 966 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 MCMDC2Q4G0Z9 681 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 TBC1D10BQ4KMP7 808 aaPredicted RBP11.27□□□□□ -0.61
VPS25-205ENST00000590339 CREB3L3Q68CJ9 461 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 SAMD7Q7Z3H4 446 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 SPRYD3Q8NCJ5 442 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 TRPM4Q8TD43 1214 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 HMG20BQ9P0W2 317 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 MAST3O60307 1309 aa11.27□□□□□ -0.61
VPS25-205ENST00000590339 CEP350Q5VT06 3117 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 SLC27A2O14975 620 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 RNF113AO15541 343 aaKnown RBP11.26□□□□□ -0.61
VPS25-205ENST00000590339 CHGBP05060 677 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 ZFYP08048 801 aaPredicted RBP11.26□□□□□ -0.61
VPS25-205ENST00000590339 UQCRFS1P1P0C7P4 283 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 SLC5A1P13866 664 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 MCAMP43121 646 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 RAB3GAP1Q15042 981 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 TSGA10IPQ3SY00 556 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 GORABQ5T7V8 394 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 JMYQ8N9B5 988 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 FBXW7Q969H0 707 aa11.26□□□□□ -0.61
VPS25-205ENST00000590339 ABT1Q9ULW3 272 aaKnown RBP11.26□□□□□ -0.61
VPS25-205ENST00000590339 ZAP70P43403 619 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 PHKA1P46020 1223 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 KCNJ4P48050 445 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 CHRNDQ07001 517 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 LRRFIP1Q32MZ4 808 aaKnown RBP11.25□□□□□ -0.61
VPS25-205ENST00000590339 CCDC102BQ68D86 513 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 CCDC129Q6ZRS4 1044 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 HELBQ8NG08 1087 aaPredicted RBP11.25□□□□□ -0.61
VPS25-205ENST00000590339 DPF2Q92785 391 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 TMX3Q96JJ7 454 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 SEC62Q99442 399 aaKnown RBP11.25□□□□□ -0.61
VPS25-205ENST00000590339 DSCC1Q9BVC3 393 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 GLIS2Q9BZE0 524 aaPredicted RBP11.25□□□□□ -0.61
VPS25-205ENST00000590339 UPF3BQ9BZI7 483 aaKnown RBP11.25□□□□□ -0.61
VPS25-205ENST00000590339 ZNF408Q9H9D4 720 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 ZSWIM6Q9HCJ5 1215 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 U3KPZ7 1027 aaPredicted RBP11.25□□□□□ -0.61
VPS25-205ENST00000590339 ZNF804BA4D1E1 1349 aa11.25□□□□□ -0.61
VPS25-205ENST00000590339 LTBP1Q14766 1721 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 SNAP23O00161 211 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 FRAT2O75474 233 aaPredicted RBP11.24□□□□□ -0.61
VPS25-205ENST00000590339 EGFRP00533 1210 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 CYP2E1P05181 493 aaPredicted RBP11.24□□□□□ -0.61
VPS25-205ENST00000590339 VIL1P09327 827 aaKnown RBP11.24□□□□□ -0.61
VPS25-205ENST00000590339 GRM1Q13255 1194 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 DEFB115Q30KQ5 88 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 ADCK5Q3MIX3 580 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 RNF20Q5VTR2 975 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 PI16Q6UXB8 463 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 DLK2Q6UY11 383 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 PAXIP1Q6ZW49 1069 aaPredicted RBP11.24□□□□□ -0.61
VPS25-205ENST00000590339 USP48Q86UV5 1035 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 TXNRD3Q86VQ6 643 aa11.24□□□□□ -0.61
VPS25-205ENST00000590339 INTS4Q96HW7 963 aaKnown RBP11.24□□□□□ -0.61
VPS25-205ENST00000590339 MXD3Q9BW11 206 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms