RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 SUCLG2Q96I99 432 aa22.26■■□□□ 1.15
CLK3-221ENST00000568139 SRCIN1Q9C0H9 1055 aa22.26■■□□□ 1.15
CLK3-221ENST00000568139 ELP3Q9H9T3 547 aa22.26■■□□□ 1.15
CLK3-221ENST00000568139 RIPOR2Q9Y4F9 1068 aa22.26■■□□□ 1.15
CLK3-221ENST00000568139 CRKP46108 304 aa22.25■■□□□ 1.15
CLK3-221ENST00000568139 CDAN1Q8IWY9 1227 aa22.25■■□□□ 1.15
CLK3-221ENST00000568139 ARMC5Q96C12 935 aa22.25■■□□□ 1.15
CLK3-221ENST00000568139 EFCC1Q9HA90 598 aa22.25■■□□□ 1.15
CLK3-221ENST00000568139 CAP1Q01518 475 aa22.24■■□□□ 1.15
CLK3-221ENST00000568139 SLC4A10Q6U841 1118 aa22.24■■□□□ 1.15
CLK3-221ENST00000568139 FBXO33Q7Z6M2 555 aa22.24■■□□□ 1.15
CLK3-221ENST00000568139 MROH5Q6ZUA9 1318 aa22.24■■□□□ 1.15
CLK3-221ENST00000568139 TCP10L2B9ZVM9 353 aa22.23■■□□□ 1.15
CLK3-221ENST00000568139 MAP3K9P80192 1104 aa22.23■■□□□ 1.15
CLK3-221ENST00000568139 GCC1Q96CN9 775 aa22.23■■□□□ 1.15
CLK3-221ENST00000568139 TMEM39BQ9GZU3 492 aa22.23■■□□□ 1.15
CLK3-221ENST00000568139 UTYO14607 1347 aa22.23■■□□□ 1.15
CLK3-221ENST00000568139 CENPFP49454 3210 aa22.23■■□□□ 1.15
CLK3-221ENST00000568139 MKI67P46013 3256 aaKnown RBP22.23■■□□□ 1.15
CLK3-221ENST00000568139 NBPF7P0C2Y1 421 aaPredicted RBP22.22■■□□□ 1.15
CLK3-221ENST00000568139 TNNI2P48788 182 aa22.22■■□□□ 1.15
CLK3-221ENST00000568139 HDLBPQ00341 1268 aaKnown RBP22.22■■□□□ 1.15
CLK3-221ENST00000568139 GRIK5Q16478 980 aa22.22■■□□□ 1.15
CLK3-221ENST00000568139 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.22■■□□□ 1.15
CLK3-221ENST00000568139 CNKSR2Q8WXI2 1034 aa22.22■■□□□ 1.15
CLK3-221ENST00000568139 BRI3BPQ8WY22 251 aa22.22■■□□□ 1.15
CLK3-221ENST00000568139 GTF2A2P52657 109 aa22.21■■□□□ 1.15
CLK3-221ENST00000568139 VGLL4Q14135 290 aa22.21■■□□□ 1.15
CLK3-221ENST00000568139 RABL6Q3YEC7 729 aaPredicted RBP22.2■■□□□ 1.14
CLK3-221ENST00000568139 VPS37DQ86XT2 251 aa22.2■■□□□ 1.14
CLK3-221ENST00000568139 TBC1D22AQ8WUA7 517 aa22.2■■□□□ 1.14
CLK3-221ENST00000568139 ZFYVE28Q9HCC9 887 aa22.2■■□□□ 1.14
CLK3-221ENST00000568139 CCL15-CCL14A0A0B4J2E2 113 aa22.19■■□□□ 1.14
CLK3-221ENST00000568139 TAF1CQ15572 869 aaPredicted RBP22.19■■□□□ 1.14
CLK3-221ENST00000568139 CCL15Q16663 113 aa22.19■■□□□ 1.14
CLK3-221ENST00000568139 MRIQ9BWK5 157 aa22.19■■□□□ 1.14
CLK3-221ENST00000568139 BICC1Q9H694 974 aaKnown RBP22.19■■□□□ 1.14
CLK3-221ENST00000568139 IQSEC3Q9UPP2 1182 aaPredicted RBP22.19■■□□□ 1.14
CLK3-221ENST00000568139 CSADQ9Y600 493 aa22.19■■□□□ 1.14
CLK3-221ENST00000568139 EN2P19622 333 aaPredicted RBP22.18■■□□□ 1.14
CLK3-221ENST00000568139 ARHGEF6Q15052 776 aa22.18■■□□□ 1.14
CLK3-221ENST00000568139 LRRC24Q50LG9 513 aa22.18■■□□□ 1.14
CLK3-221ENST00000568139 CAVIN4Q5BKX8 364 aa22.18■■□□□ 1.14
CLK3-221ENST00000568139 VGLL2Q8N8G2 317 aa22.18■■□□□ 1.14
CLK3-221ENST00000568139 ANP32CO43423 234 aa22.17■■□□□ 1.14
CLK3-221ENST00000568139 CHAF1AQ13111 956 aaPredicted RBP22.17■■□□□ 1.14
CLK3-221ENST00000568139 FAM43AQ8N2R8 423 aa22.17■■□□□ 1.14
CLK3-221ENST00000568139 ANKRD44Q8N8A2 993 aa22.17■■□□□ 1.14
CLK3-221ENST00000568139 TEKT1Q969V4 418 aa22.17■■□□□ 1.14
CLK3-221ENST00000568139 OTUD5Q96G74 571 aa22.17■■□□□ 1.14
CLK3-221ENST00000568139 ZNF333Q96JL9 665 aa22.17■■□□□ 1.14
CLK3-221ENST00000568139 SPDYE5A6NIY4 337 aa22.16■■□□□ 1.14
CLK3-221ENST00000568139 PDE8BO95263 885 aa22.16■■□□□ 1.14
CLK3-221ENST00000568139 METTL24Q5JXM2 366 aa22.16■■□□□ 1.14
CLK3-221ENST00000568139 ZDHHC15Q96MV8 337 aa22.16■■□□□ 1.14
CLK3-221ENST00000568139 BRCA2P51587 3418 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 FRAT2O75474 233 aaPredicted RBP22.15■■□□□ 1.14
CLK3-221ENST00000568139 CACNB3P54284 484 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 HABP4Q5JVS0 413 aaKnown RBP22.15■■□□□ 1.14
CLK3-221ENST00000568139 FKBP1CQ5VVH2 108 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 FAM83AQ86UY5 434 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 ERO1BQ86YB8 467 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 TMEM106CQ9BVX2 250 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 SUGT1Q9Y2Z0 365 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 SNCAIPQ9Y6H5 919 aa22.15■■□□□ 1.14
CLK3-221ENST00000568139 BCAMP50895 628 aa22.14■■□□□ 1.13
CLK3-221ENST00000568139 APOBEC3HQ6NTF7 200 aaKnown RBP22.14■■□□□ 1.13
CLK3-221ENST00000568139 NBPF11Q86T75 865 aa22.14■■□□□ 1.13
CLK3-221ENST00000568139 ZCCHC17Q9NP64 241 aaKnown RBP22.14■■□□□ 1.13
CLK3-221ENST00000568139 PTCH2Q9Y6C5 1203 aa22.14■■□□□ 1.13
CLK3-221ENST00000568139 KIF16BQ96L93 1317 aa22.13■■□□□ 1.13
CLK3-221ENST00000568139 CETPP11597 493 aa22.13■■□□□ 1.13
CLK3-221ENST00000568139 HOOK2Q96ED9 719 aa22.13■■□□□ 1.13
CLK3-221ENST00000568139 TMOD2Q9NZR1 351 aa22.13■■□□□ 1.13
CLK3-221ENST00000568139 MAST3O60307 1309 aa22.12■■□□□ 1.13
CLK3-221ENST00000568139 TLR2O60603 784 aa22.12■■□□□ 1.13
CLK3-221ENST00000568139 FGFR2P21802 821 aa22.12■■□□□ 1.13
CLK3-221ENST00000568139 SLC9C1Q4G0N8 1177 aa22.12■■□□□ 1.13
CLK3-221ENST00000568139 HHIPL2Q6UWX4 724 aa22.12■■□□□ 1.13
CLK3-221ENST00000568139 MRPL50Q8N5N7 158 aaKnown RBP22.12■■□□□ 1.13
CLK3-221ENST00000568139 WRNIP1Q96S55 665 aa22.12■■□□□ 1.13
CLK3-221ENST00000568139 ZNF521Q96K83 1311 aa22.11■■□□□ 1.13
CLK3-221ENST00000568139 BTBD19C9JJ37 291 aa22.11■■□□□ 1.13
CLK3-221ENST00000568139 IRF6O14896 467 aa22.11■■□□□ 1.13
CLK3-221ENST00000568139 WDHD1O75717 1129 aaPredicted RBP22.11■■□□□ 1.13
CLK3-221ENST00000568139 KLHDC4Q8TBB5 520 aa22.11■■□□□ 1.13
CLK3-221ENST00000568139 ZKSCAN4Q969J2 545 aaPredicted RBP22.11■■□□□ 1.13
CLK3-221ENST00000568139 RPAP1Q9BWH6 1393 aaPredicted RBP22.11■■□□□ 1.13
CLK3-221ENST00000568139 PPIL2Q13356 520 aa22.1■■□□□ 1.13
CLK3-221ENST00000568139 SNAPC2Q13487 334 aa22.1■■□□□ 1.13
CLK3-221ENST00000568139 FAM9BQ8IZU0 186 aa22.1■■□□□ 1.13
CLK3-221ENST00000568139 USP44Q9H0E7 712 aa22.1■■□□□ 1.13
CLK3-221ENST00000568139 ZSWIM8A7E2V4 1837 aa22.1■■□□□ 1.13
CLK3-221ENST00000568139 MYH13Q9UKX3 1938 aa22.1■■□□□ 1.13
CLK3-221ENST00000568139 PTPRCP08575 1304 aa22.09■■□□□ 1.13
CLK3-221ENST00000568139 IFIT1P09914 478 aaKnown RBP22.09■■□□□ 1.13
CLK3-221ENST00000568139 LACTBP83111 547 aaPredicted RBP22.09■■□□□ 1.13
CLK3-221ENST00000568139 PUM3Q15397 648 aaKnown RBP22.09■■□□□ 1.13
CLK3-221ENST00000568139 DCAF15Q66K64 600 aa22.09■■□□□ 1.13
CLK3-221ENST00000568139 ARHGAP39Q9C0H5 1083 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms