RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PTPN18Q99952 460 aa21.22■□□□□ 0.99
CLN3-211ENST00000564091 TMEM39BQ9GZU3 492 aa21.22■□□□□ 0.99
CLN3-211ENST00000564091 ELP3Q9H9T3 547 aa21.22■□□□□ 0.99
CLN3-211ENST00000564091 TRIM17Q9Y577 477 aa21.22■□□□□ 0.99
CLN3-211ENST00000564091 FRAT2O75474 233 aaPredicted RBP21.21■□□□□ 0.99
CLN3-211ENST00000564091 BCAMP50895 628 aa21.21■□□□□ 0.99
CLN3-211ENST00000564091 SSH1Q8WYL5 1049 aa21.21■□□□□ 0.99
CLN3-211ENST00000564091 PDE4DIPQ5VU43 2346 aa21.21■□□□□ 0.99
CLN3-211ENST00000564091 PDE8BO95263 885 aa21.2■□□□□ 0.98
CLN3-211ENST00000564091 CRHR2Q13324 411 aa21.2■□□□□ 0.98
CLN3-211ENST00000564091 CAVIN4Q5BKX8 364 aa21.2■□□□□ 0.98
CLN3-211ENST00000564091 VGLL2Q8N8G2 317 aa21.2■□□□□ 0.98
CLN3-211ENST00000564091 CNKSR2Q8WXI2 1034 aa21.2■□□□□ 0.98
CLN3-211ENST00000564091 OPTNQ96CV9 577 aa21.2■□□□□ 0.98
CLN3-211ENST00000564091 USP44Q9H0E7 712 aa21.2■□□□□ 0.98
CLN3-211ENST00000564091 CACNB3P54284 484 aa21.19■□□□□ 0.98
CLN3-211ENST00000564091 OTUD7BQ6GQQ9 843 aa21.19■□□□□ 0.98
CLN3-211ENST00000564091 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.19■□□□□ 0.98
CLN3-211ENST00000564091 OTOP1Q7RTM1 612 aa21.19■□□□□ 0.98
CLN3-211ENST00000564091 PTPRCP08575 1304 aa21.19■□□□□ 0.98
CLN3-211ENST00000564091 HTTP42858 3142 aa21.18■□□□□ 0.98
CLN3-211ENST00000564091 TESPA1A2RU30 521 aaPredicted RBP21.18■□□□□ 0.98
CLN3-211ENST00000564091 E9PSI1 815 aa21.17■□□□□ 0.98
CLN3-211ENST00000564091 TNNI2P48788 182 aa21.17■□□□□ 0.98
CLN3-211ENST00000564091 MAP3K9P80192 1104 aa21.17■□□□□ 0.98
CLN3-211ENST00000564091 CD99L2Q8TCZ2 262 aa21.17■□□□□ 0.98
CLN3-211ENST00000564091 TBC1D22AQ8WUA7 517 aa21.17■□□□□ 0.98
CLN3-211ENST00000564091 MS4A4AQ96JQ5 239 aa21.17■□□□□ 0.98
CLN3-211ENST00000564091 CACNA1FO60840 1977 aa21.16■□□□□ 0.98
CLN3-211ENST00000564091 HDLBPQ00341 1268 aaKnown RBP21.16■□□□□ 0.98
CLN3-211ENST00000564091 VGLL4Q14135 290 aa21.16■□□□□ 0.98
CLN3-211ENST00000564091 TEKT1Q969V4 418 aa21.16■□□□□ 0.98
CLN3-211ENST00000564091 FGFR2P21802 821 aa21.15■□□□□ 0.98
CLN3-211ENST00000564091 CAP1Q01518 475 aa21.15■□□□□ 0.98
CLN3-211ENST00000564091 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.15■□□□□ 0.98
CLN3-211ENST00000564091 BRI3BPQ8WY22 251 aa21.15■□□□□ 0.98
CLN3-211ENST00000564091 ERO1AQ96HE7 468 aa21.15■□□□□ 0.98
CLN3-211ENST00000564091 IFIT1P09914 478 aaKnown RBP21.14■□□□□ 0.97
CLN3-211ENST00000564091 RFX5P48382 616 aaPredicted RBP21.14■□□□□ 0.97
CLN3-211ENST00000564091 SLFN5Q08AF3 891 aa21.14■□□□□ 0.97
CLN3-211ENST00000564091 PUM3Q15397 648 aaKnown RBP21.14■□□□□ 0.97
CLN3-211ENST00000564091 PRPF38BQ5VTL8 546 aaKnown RBP21.14■□□□□ 0.97
CLN3-211ENST00000564091 APOBEC3HQ6NTF7 200 aaKnown RBP21.14■□□□□ 0.97
CLN3-211ENST00000564091 CDCA7LQ96GN5 454 aa21.14■□□□□ 0.97
CLN3-211ENST00000564091 CSADQ9Y600 493 aa21.14■□□□□ 0.97
CLN3-211ENST00000564091 CCL15-CCL14A0A0B4J2E2 113 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 EYA2O00167 538 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 SP3Q02447 781 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 CCL15Q16663 113 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 OTUD5Q96G74 571 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 ZDHHC15Q96MV8 337 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 MRIQ9BWK5 157 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 EFCC1Q9HA90 598 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 PTPN22Q9Y2R2 807 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 CENPFP49454 3210 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 A0A1B0GUL6 1792 aa21.13■□□□□ 0.97
CLN3-211ENST00000564091 MKI67P46013 3256 aaKnown RBP21.12■□□□□ 0.97
CLN3-211ENST00000564091 GTF2A2P52657 109 aa21.11■□□□□ 0.97
CLN3-211ENST00000564091 FAM43AQ8N2R8 423 aa21.11■□□□□ 0.97
CLN3-211ENST00000564091 SMC4Q9NTJ3 1288 aa21.11■□□□□ 0.97
CLN3-211ENST00000564091 TMOD2Q9NZR1 351 aa21.11■□□□□ 0.97
CLN3-211ENST00000564091 POTEFA5A3E0 1075 aa21.1■□□□□ 0.97
CLN3-211ENST00000564091 TAF1CQ15572 869 aaPredicted RBP21.1■□□□□ 0.97
CLN3-211ENST00000564091 ATG9AQ7Z3C6 839 aa21.1■□□□□ 0.97
CLN3-211ENST00000564091 LPIN2Q92539 896 aa21.1■□□□□ 0.97
CLN3-211ENST00000564091 ZKSCAN4Q969J2 545 aaPredicted RBP21.1■□□□□ 0.97
CLN3-211ENST00000564091 WRNIP1Q96S55 665 aa21.1■□□□□ 0.97
CLN3-211ENST00000564091 SUGT1Q9Y2Z0 365 aa21.1■□□□□ 0.97
CLN3-211ENST00000564091 SNCAIPQ9Y6H5 919 aa21.1■□□□□ 0.97
CLN3-211ENST00000564091 KIF16BQ96L93 1317 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 BRCA2P51587 3418 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 SPDYE5A6NIY4 337 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 SLC5A1P13866 664 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 ALDH1L2Q3SY69 923 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 INTS3Q68E01 1043 aaKnown RBP21.09■□□□□ 0.97
CLN3-211ENST00000564091 HHIPL2Q6UWX4 724 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 FAM83AQ86UY5 434 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 SIL1Q9H173 461 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 ZFYVE28Q9HCC9 887 aa21.09■□□□□ 0.97
CLN3-211ENST00000564091 MAST3O60307 1309 aa21.08■□□□□ 0.97
CLN3-211ENST00000564091 FKBP1CQ5VVH2 108 aa21.08■□□□□ 0.97
CLN3-211ENST00000564091 MIGA2Q7L4E1 593 aa21.08■□□□□ 0.97
CLN3-211ENST00000564091 WDR66Q8TBY9 1149 aa21.07■□□□□ 0.96
CLN3-211ENST00000564091 IRF6O14896 467 aa21.06■□□□□ 0.96
CLN3-211ENST00000564091 UBTFL1P0CB47 393 aaPredicted RBP21.06■□□□□ 0.96
CLN3-211ENST00000564091 DIXDC1Q155Q3 683 aa21.06■□□□□ 0.96
CLN3-211ENST00000564091 ERO1BQ86YB8 467 aa21.06■□□□□ 0.96
CLN3-211ENST00000564091 ARMC5Q96C12 935 aa21.06■□□□□ 0.96
CLN3-211ENST00000564091 NOB1Q9ULX3 412 aaKnown RBP21.06■□□□□ 0.96
CLN3-211ENST00000564091 CETPP11597 493 aa21.05■□□□□ 0.96
CLN3-211ENST00000564091 TCP10Q12799 353 aa21.05■□□□□ 0.96
CLN3-211ENST00000564091 HOOK2Q96ED9 719 aa21.05■□□□□ 0.96
CLN3-211ENST00000564091 DAGLAQ9Y4D2 1042 aa21.05■□□□□ 0.96
CLN3-211ENST00000564091 BTBD19C9JJ37 291 aa21.04■□□□□ 0.96
CLN3-211ENST00000564091 PRDX5P30044 214 aa21.04■□□□□ 0.96
CLN3-211ENST00000564091 ATP2B3Q16720 1220 aa21.04■□□□□ 0.96
CLN3-211ENST00000564091 DCAF15Q66K64 600 aa21.04■□□□□ 0.96
CLN3-211ENST00000564091 CDC42EP5Q6NZY7 148 aa21.04■□□□□ 0.96
CLN3-211ENST00000564091 TRMT2AQ8IZ69 625 aaKnown RBP21.04■□□□□ 0.96
CLN3-211ENST00000564091 ZNF341Q9BYN7 854 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms