RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 LARP6Q9BRS8 491 aaKnown RBP25.35■■□□□ 1.65
CLN3-209ENST00000561689 IL1R1P14778 569 aa25.35■■□□□ 1.65
CLN3-209ENST00000561689 HAND2P61296 217 aa25.35■■□□□ 1.65
CLN3-209ENST00000561689 BLOC1S2Q6QNY1 142 aa25.35■■□□□ 1.65
CLN3-209ENST00000561689 STOX1Q6ZVD7 989 aa25.35■■□□□ 1.65
CLN3-209ENST00000561689 UPF1Q92900 1129 aaKnown RBP eCLIP25.35■■□□□ 1.65
CLN3-209ENST00000561689 NSUN4Q96CB9 384 aaKnown RBP25.35■■□□□ 1.65
CLN3-209ENST00000561689 IL27Q8NEV9 243 aa25.34■■□□□ 1.65
CLN3-209ENST00000561689 WDR66Q8TBY9 1149 aa25.34■■□□□ 1.65
CLN3-209ENST00000561689 TCEANC2Q96MN5 208 aa25.34■■□□□ 1.65
CLN3-209ENST00000561689 NEK1Q96PY6 1258 aa25.34■■□□□ 1.65
CLN3-209ENST00000561689 ATF5Q9Y2D1 282 aaPredicted RBP25.34■■□□□ 1.65
CLN3-209ENST00000561689 C10orf71Q711Q0 1435 aa25.33■■□□□ 1.65
CLN3-209ENST00000561689 LTBP1Q14766 1721 aa25.33■■□□□ 1.65
CLN3-209ENST00000561689 NBR1Q14596 966 aa25.33■■□□□ 1.65
CLN3-209ENST00000561689 GOLGB1Q14789 3259 aaKnown RBP25.33■■□□□ 1.65
CLN3-209ENST00000561689 PRKAB2O43741 272 aa25.33■■□□□ 1.64
CLN3-209ENST00000561689 RPS6KB1P23443 525 aa25.33■■□□□ 1.64
CLN3-209ENST00000561689 R3HDM1Q15032 1099 aaKnown RBP25.33■■□□□ 1.64
CLN3-209ENST00000561689 IMMTQ16891 758 aaKnown RBP25.33■■□□□ 1.64
CLN3-209ENST00000561689 ZC3H12CQ9C0D7 883 aaKnown RBP25.33■■□□□ 1.64
CLN3-209ENST00000561689 SALL1Q9NSC2 1324 aa25.31■■□□□ 1.64
CLN3-209ENST00000561689 MAGEB6P1A0A0J9YX57 407 aa25.31■■□□□ 1.64
CLN3-209ENST00000561689 PATL2C9JE40 543 aaKnown RBP25.31■■□□□ 1.64
CLN3-209ENST00000561689 E7EWF7 191 aa25.31■■□□□ 1.64
CLN3-209ENST00000561689 SPTY2D1Q68D10 685 aaPredicted RBP25.31■■□□□ 1.64
CLN3-209ENST00000561689 ZGPATQ8N5A5 531 aaKnown RBP25.31■■□□□ 1.64
CLN3-209ENST00000561689 SLC4A4Q9Y6R1 1079 aa25.31■■□□□ 1.64
CLN3-209ENST00000561689 DUOX1Q9NRD9 1551 aa25.31■■□□□ 1.64
CLN3-209ENST00000561689 GRIK5Q16478 980 aa25.31■■□□□ 1.64
CLN3-209ENST00000561689 LDHBP07195 334 aaKnown RBP25.3■■□□□ 1.64
CLN3-209ENST00000561689 DZIP1Q86YF9 867 aaKnown RBP25.3■■□□□ 1.64
CLN3-209ENST00000561689 EPB41L4AQ9HCS5 686 aaPredicted RBP25.3■■□□□ 1.64
CLN3-209ENST00000561689 GSG1L2A8MUP6 293 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 ZNF213O14771 459 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 DYNLL1P63167 89 aaKnown RBP25.29■■□□□ 1.64
CLN3-209ENST00000561689 IFNL3Q8IZI9 196 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 C7orf43Q8WVR3 580 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 RIOK1Q9BRS2 568 aaKnown RBP25.29■■□□□ 1.64
CLN3-209ENST00000561689 LIMCH1Q9UPQ0 1083 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 CACNA1SQ13698 1873 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 GNAT2P19087 354 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 DDIT3P35638 169 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 DOK7Q18PE1 504 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 COA1Q9GZY4 146 aa25.29■■□□□ 1.64
CLN3-209ENST00000561689 MTFR1LQ9H019 292 aa25.28■■□□□ 1.64
CLN3-209ENST00000561689 SLX4Q8IY92 1834 aa25.28■■□□□ 1.64
CLN3-209ENST00000561689 MYH13Q9UKX3 1938 aa25.28■■□□□ 1.64
CLN3-209ENST00000561689 DPEP1P16444 411 aa25.27■■□□□ 1.64
CLN3-209ENST00000561689 ALX1Q15699 326 aa25.27■■□□□ 1.64
CLN3-209ENST00000561689 EYA3Q99504 573 aa25.27■■□□□ 1.64
CLN3-209ENST00000561689 NAPBQ9H115 298 aa25.27■■□□□ 1.64
CLN3-209ENST00000561689 SDR42E1Q8WUS8 393 aa25.26■■□□□ 1.63
CLN3-209ENST00000561689 C21orf2O43822 256 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 HMGB1P09429 215 aaKnown RBP25.25■■□□□ 1.63
CLN3-209ENST00000561689 POLD1P28340 1107 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 GTF2IP78347 998 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 CUL4AQ13619 759 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 MFSD14BQ5SR56 506 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 NACAP1Q9BZK3 213 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 NBPF3Q9H094 633 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 AATFQ9NY61 560 aaKnown RBP eCLIP25.25■■□□□ 1.63
CLN3-209ENST00000561689 CHMP5Q9NZZ3 219 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 G3V3G9 751 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 KCNA3P22001 575 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 TDO2P48775 406 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 DCAF8Q5TAQ9 597 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 DHX32Q7L7V1 743 aaKnown RBP25.25■■□□□ 1.63
CLN3-209ENST00000561689 TTLL6Q8N841 843 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 LRRC2Q9BYS8 371 aa25.25■■□□□ 1.63
CLN3-209ENST00000561689 LARGE1O95461 756 aa25.24■■□□□ 1.63
CLN3-209ENST00000561689 TOB2Q14106 344 aaPredicted RBP25.24■■□□□ 1.63
CLN3-209ENST00000561689 DIXDC1Q155Q3 683 aa25.24■■□□□ 1.63
CLN3-209ENST00000561689 FBXW7Q969H0 707 aa25.24■■□□□ 1.63
CLN3-209ENST00000561689 PSDA5PKW4 1024 aaPredicted RBP25.24■■□□□ 1.63
CLN3-209ENST00000561689 TBC1D10CQ8IV04 446 aa25.24■■□□□ 1.63
CLN3-209ENST00000561689 ALDH8A1Q9H2A2 487 aaPredicted RBP25.24■■□□□ 1.63
CLN3-209ENST00000561689 TPCN1Q9ULQ1 816 aa25.24■■□□□ 1.63
CLN3-209ENST00000561689 Q6ZUG5 572 aa25.23■■□□□ 1.63
CLN3-209ENST00000561689 CHST3Q7LGC8 479 aa25.23■■□□□ 1.63
CLN3-209ENST00000561689 ZMYM6O95789 1325 aa25.23■■□□□ 1.63
CLN3-209ENST00000561689 FAM205AQ6ZU69 1335 aa25.23■■□□□ 1.63
CLN3-209ENST00000561689 ANKRD1Q15327 319 aa25.22■■□□□ 1.63
CLN3-209ENST00000561689 TMED8Q6PL24 325 aaPredicted RBP25.22■■□□□ 1.63
CLN3-209ENST00000561689 TBC1D22AQ8WUA7 517 aa25.22■■□□□ 1.63
CLN3-209ENST00000561689 RTFDC1Q9BY42 306 aaPredicted RBP25.22■■□□□ 1.63
CLN3-209ENST00000561689 DBNDD1Q9H9R9 158 aa25.22■■□□□ 1.63
CLN3-209ENST00000561689 EXOSC10Q01780 885 aaKnown RBP25.22■■□□□ 1.63
CLN3-209ENST00000561689 GSTO1P78417 241 aa25.21■■□□□ 1.63
CLN3-209ENST00000561689 ME3Q16798 604 aa25.21■■□□□ 1.63
CLN3-209ENST00000561689 CC2D2BQ6DHV5 1058 aa25.21■■□□□ 1.63
CLN3-209ENST00000561689 FGD1P98174 961 aa25.2■■□□□ 1.63
CLN3-209ENST00000561689 CTDSPL2Q05D32 466 aa25.2■■□□□ 1.63
CLN3-209ENST00000561689 PPP1R1BQ9UD71 204 aaPredicted RBP25.2■■□□□ 1.63
CLN3-209ENST00000561689 IGSF3O75054 1194 aa25.2■■□□□ 1.62
CLN3-209ENST00000561689 NCOA7Q8NI08 942 aa25.2■■□□□ 1.62
CLN3-209ENST00000561689 INTS4Q96HW7 963 aaKnown RBP25.2■■□□□ 1.62
CLN3-209ENST00000561689 ZSCAN31Q96LW9 406 aaPredicted RBP25.2■■□□□ 1.62
CLN3-209ENST00000561689 INCENPQ9NQS7 918 aa25.2■■□□□ 1.62
CLN3-209ENST00000561689 CIZ1Q9ULV3 898 aaPredicted RBP25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms