RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 POLLQ9UGP5 575 aa8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 SH3TC1Q8TE82 1336 aa8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 LAMB4A4D0S4 1761 aa8.96□□□□□ -0.97
DEPDC4-208ENST00000549341 LCE2BO14633 110 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 UFL1O94874 794 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 MYCP01106 439 aaPredicted RBP8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 EIF2S2P20042 333 aaKnown RBP8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 EIF4A1P60842 406 aaKnown RBP8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 EXOSC9Q06265 439 aaKnown RBP8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 AIMP1Q12904 312 aaKnown RBP8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 TCIRG1Q13488 830 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 PDE3AQ14432 1141 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 PROSER3Q2NL68 480 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 ALDH1L2Q3SY69 923 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 OTOP1Q7RTM1 612 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 TMC4Q7Z404 712 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 PACS2Q86VP3 889 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 NLRP10Q86W26 655 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 NECTIN2Q92692 538 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 CELF1Q92879 486 aaKnown RBP8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 CCDC136Q96JN2 1154 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 PRKD2Q9BZL6 878 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 MYOZ2Q9NPC6 264 aa8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 V9GY48 417 aaPredicted RBP8.96□□□□□ -0.98
DEPDC4-208ENST00000549341 H0YGN5 161 aa8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 GTPBP6O43824 516 aaPredicted RBP8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 NF2P35240 595 aa8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 RARSP54136 660 aaKnown RBP8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 NOM1Q5C9Z4 860 aaKnown RBP8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 INTS3Q68E01 1043 aaKnown RBP8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 RSBN1LQ6PCB5 846 aaPredicted RBP8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 SLC17A8Q8NDX2 589 aa8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 TBC1D16Q8TBP0 767 aa8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 CHMP4BQ9H444 224 aaKnown RBP8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 SMC4Q9NTJ3 1288 aa8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 ERBB4Q15303 1308 aa8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 KIF16BQ96L93 1317 aa8.95□□□□□ -0.98
DEPDC4-208ENST00000549341 VIL1P09327 827 aaKnown RBP8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 USP17L8P0C7I0 530 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 ZNF853P0CG23 659 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 TM4SF4P48230 202 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 ZNF280AP59817 542 aaPredicted RBP8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 HSP90AB3PQ58FF7 597 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 RTL5Q5HYW3 569 aaPredicted RBP8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 CD99L2Q8TCZ2 262 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 XAGE3Q8WTP9 111 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 TSR2Q969E8 191 aaKnown RBP8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 ZC3H12CQ9C0D7 883 aaKnown RBP8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 ANKIB1Q9P2G1 1089 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 ZNF609O15014 1411 aa8.94□□□□□ -0.98
DEPDC4-208ENST00000549341 LAMA3Q16787 3333 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 SASH1O94885 1247 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 PTPN12Q05209 780 aaKnown RBP8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 SLC4A8Q2Y0W8 1093 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 TWISTNBQ3B726 338 aaPredicted RBP8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 NBPF9Q3BBW0 867 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 TJAP1Q5JTD0 557 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 ZKSCAN2Q63HK3 967 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 FTSJ3Q8IY81 847 aaKnown RBP8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 FRAT1Q92837 279 aaPredicted RBP8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 TSPYL4Q9UJ04 414 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 FZD1Q9UP38 647 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 PTPN22Q9Y2R2 807 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 PITPNM2Q9BZ72 1349 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 DLG5Q8TDM6 1919 aa8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 KIAA0100Q14667 2235 aaKnown RBP8.93□□□□□ -0.98
DEPDC4-208ENST00000549341 CHL1O00533 1208 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 PLIN1O60240 522 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 BCAR3O75815 825 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 ALDH1A1P00352 501 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 PDIA6Q15084 440 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 SPRYD7Q5W111 196 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 COPS6Q7L5N1 327 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 ARMC9Q7Z3E5 817 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 LRP10Q7Z4F1 713 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 AGBL3Q8NEM8 1001 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 ARMC5Q96C12 935 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 FAM89AQ96GI7 184 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 ERO1AQ96HE7 468 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 CFHR5Q9BXR6 569 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 EFCC1Q9HA90 598 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 MBIPQ9NS73 344 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 GGA1Q9UJY5 639 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 ANGEL1Q9UNK9 670 aaKnown RBP8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 AKAP11Q9UKA4 1901 aa8.92□□□□□ -0.98
DEPDC4-208ENST00000549341 LRRC37AA6NMS7 1700 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 COL4A1P02462 1669 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 IGF2BP3O00425 579 aaKnown RBP eCLIP8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 SLC9C1Q4G0N8 1177 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 EXOC6Q8TAG9 804 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 CRBNQ96SW2 442 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 MXD3Q9BW11 206 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 IL21Q9HBE4 155 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 COL6A3P12111 3177 aa8.91□□□□□ -0.98
DEPDC4-208ENST00000549341 NUP98P52948 1817 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 USP17L3A6NCW0 530 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 USP17L4A6NCW7 530 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 MANSC4A6NHS7 340 aaPredicted RBP8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 ATP5J2-PTCD1G3V325 749 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 VAMP4O75379 141 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms