RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NWD2Q9ULI1 1742 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 ZPR1O75312 459 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 UQCRFS1P1P0C7P4 283 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 FDPSP14324 419 aaKnown RBP13.05□□□□□ -0.32
CUX1-212ENST00000547394 SETDB2Q96T68 719 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 TSPY26PQ9H489 355 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 RAI14Q9P0K7 980 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 CYP2D7A0A087X1C5 515 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 ADD1P35611 737 aaKnown RBP13.05□□□□□ -0.32
CUX1-212ENST00000547394 TTF1Q15361 905 aaPredicted RBP13.05□□□□□ -0.32
CUX1-212ENST00000547394 MICU3Q86XE3 530 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 VPS37DQ86XT2 251 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 CCDC82Q8N4S0 544 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 TMEM87AQ8NBN3 555 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 NCOA7Q8NI08 942 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 MINPP1Q9UNW1 487 aa13.05□□□□□ -0.32
CUX1-212ENST00000547394 A0A087WWV3 80 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 POLR3DP05423 398 aaPredicted RBP13.04□□□□□ -0.32
CUX1-212ENST00000547394 MCM5P33992 734 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 MAP3K12Q12852 859 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 CHAF1AQ13111 956 aaPredicted RBP13.04□□□□□ -0.32
CUX1-212ENST00000547394 RESTQ13127 1097 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 FNBP4Q8N3X1 1017 aaPredicted RBP13.04□□□□□ -0.32
CUX1-212ENST00000547394 CHMP4CQ96CF2 233 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 HPS5Q9UPZ3 1129 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 UBE3CQ15386 1083 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 FAM196AQ6ZSG2 479 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 TXNRD3Q86VQ6 643 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 CMTR1Q8N1G2 835 aaKnown RBP13.04□□□□□ -0.32
CUX1-212ENST00000547394 LEO1Q8WVC0 666 aaPredicted RBP13.04□□□□□ -0.32
CUX1-212ENST00000547394 PHKBQ93100 1093 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 CDC5LQ99459 802 aaKnown RBP13.04□□□□□ -0.32
CUX1-212ENST00000547394 NAPBQ9H115 298 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 LRRC4BQ9NT99 713 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 ISY1Q9ULR0 285 aaKnown RBP13.04□□□□□ -0.32
CUX1-212ENST00000547394 SLC4A4Q9Y6R1 1079 aa13.04□□□□□ -0.32
CUX1-212ENST00000547394 CYP7A1P22680 504 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 DYNLL1P63167 89 aaKnown RBP13.03□□□□□ -0.32
CUX1-212ENST00000547394 CCDC183Q5T5S1 534 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 IFNL3Q8IZI9 196 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 SMARCC2Q8TAQ2 1214 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 ANP32BQ92688 251 aaKnown RBP13.03□□□□□ -0.32
CUX1-212ENST00000547394 PGBD1Q96JS3 809 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 AFF2P51816 1311 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 GOLGA6L4A6NEF3 574 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 MINDY4BA8MYZ0 360 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 TDO2P48775 406 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 TRDNQ13061 729 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 ZSCAN25Q6NSZ9 544 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 SYAP1Q96A49 352 aaPredicted RBP13.03□□□□□ -0.32
CUX1-212ENST00000547394 DACT1Q9NYF0 836 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 RTCBQ9Y3I0 505 aaKnown RBP13.03□□□□□ -0.32
CUX1-212ENST00000547394 GSG1L2A8MUP6 293 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 BICD2Q8TD16 824 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 ERCC4Q92889 916 aaPredicted RBP13.03□□□□□ -0.32
CUX1-212ENST00000547394 AGXT2Q9BYV1 514 aa13.03□□□□□ -0.32
CUX1-212ENST00000547394 SEPT12Q8IYM1 358 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 GJD4Q96KN9 370 aaPredicted RBP13.02□□□□□ -0.33
CUX1-212ENST00000547394 DDX60Q8IY21 1712 aaKnown RBP13.02□□□□□ -0.33
CUX1-212ENST00000547394 CPLX1O14810 134 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 NR1I2O75469 434 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 PRDM1O75626 825 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 CLEC4GQ6UXB4 293 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 NFXL1Q6ZNB6 911 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 ILDR1Q86SU0 546 aaPredicted RBP13.02□□□□□ -0.33
CUX1-212ENST00000547394 FAM43AQ8N2R8 423 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 FBXW7Q969H0 707 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 ZNF512BQ96KM6 892 aaPredicted RBP13.02□□□□□ -0.33
CUX1-212ENST00000547394 AK7Q96M32 723 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 USP28Q96RU2 1077 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 NARFQ9UHQ1 456 aa13.02□□□□□ -0.33
CUX1-212ENST00000547394 RPS6KA4O75676 772 aa13.01□□□□□ -0.33
CUX1-212ENST00000547394 FAM84BQ96KN1 310 aaPredicted RBP13.01□□□□□ -0.33
CUX1-212ENST00000547394 ORC3Q9UBD5 711 aaPredicted RBP13.01□□□□□ -0.33
CUX1-212ENST00000547394 USP25Q9UHP3 1055 aa13.01□□□□□ -0.33
CUX1-212ENST00000547394 CARMIL3Q8ND23 1372 aa13.01□□□□□ -0.33
CUX1-212ENST00000547394 COL1A1P02452 1464 aaPredicted RBP13.01□□□□□ -0.33
CUX1-212ENST00000547394 CDC27P30260 824 aa13.01□□□□□ -0.33
CUX1-212ENST00000547394 RFC4P35249 363 aa13.01□□□□□ -0.33
CUX1-212ENST00000547394 ZNF384Q8TF68 577 aa13.01□□□□□ -0.33
CUX1-212ENST00000547394 ZSWIM5Q9P217 1185 aa13.01□□□□□ -0.33
CUX1-212ENST00000547394 RPS8P62241 208 aaKnown RBP13□□□□□ -0.33
CUX1-212ENST00000547394 ZNF274Q96GC6 653 aaPredicted RBP13□□□□□ -0.33
CUX1-212ENST00000547394 NLRP3Q96P20 1036 aa13□□□□□ -0.33
CUX1-212ENST00000547394 SRCAPQ6ZRS2 3230 aa13□□□□□ -0.33
CUX1-212ENST00000547394 ESPNB1AK53 854 aa13□□□□□ -0.33
CUX1-212ENST00000547394 PATL2C9JE40 543 aaKnown RBP13□□□□□ -0.33
CUX1-212ENST00000547394 CCDC173Q0VFZ6 552 aa13□□□□□ -0.33
CUX1-212ENST00000547394 CNTNAP4Q9C0A0 1308 aa12.99□□□□□ -0.33
CUX1-212ENST00000547394 SALL1Q9NSC2 1324 aa12.99□□□□□ -0.33
CUX1-212ENST00000547394 NFIXQ14938 502 aa12.99□□□□□ -0.33
CUX1-212ENST00000547394 TMEM67Q5HYA8 995 aa12.99□□□□□ -0.33
CUX1-212ENST00000547394 BSDC1Q9NW68 430 aaPredicted RBP12.99□□□□□ -0.33
CUX1-212ENST00000547394 KIF28PB7ZC32 967 aa12.99□□□□□ -0.33
CUX1-212ENST00000547394 IFIT3O14879 490 aaKnown RBP12.99□□□□□ -0.33
CUX1-212ENST00000547394 PRDX5P30044 214 aa12.99□□□□□ -0.33
CUX1-212ENST00000547394 SF3B3Q15393 1217 aaKnown RBP12.99□□□□□ -0.33
CUX1-212ENST00000547394 ANGEL1Q9UNK9 670 aaKnown RBP12.99□□□□□ -0.33
CUX1-212ENST00000547394 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.99□□□□□ -0.33
CUX1-212ENST00000547394 METAP2P50579 478 aaKnown RBP eCLIP12.99□□□□□ -0.333e-6■■■■□ 24.7
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms