RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 SIL1Q9H173 461 aa20.19■□□□□ 0.82
CLSTN3-204ENST00000535313 LRRFIP2Q9Y608 721 aaKnown RBP20.19■□□□□ 0.82
CLSTN3-204ENST00000535313 UNCXA6NJT0 531 aa20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 CIAO1O76071 339 aa20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 IREB2P48200 963 aaKnown RBP20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 HDLBPQ00341 1268 aaKnown RBP20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 ATG9AQ7Z3C6 839 aa20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 TEKT1Q969V4 418 aa20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 CEP126Q9P2H0 1117 aa20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 ARAP2Q8WZ64 1704 aa20.18■□□□□ 0.82
CLSTN3-204ENST00000535313 SSC5DA1L4H1 1573 aa20.17■□□□□ 0.82
CLSTN3-204ENST00000535313 IPO8O15397 1037 aaKnown RBP20.17■□□□□ 0.82
CLSTN3-204ENST00000535313 TNNI2P48788 182 aa20.17■□□□□ 0.82
CLSTN3-204ENST00000535313 GRIK5Q16478 980 aa20.17■□□□□ 0.82
CLSTN3-204ENST00000535313 SUGT1Q9Y2Z0 365 aa20.17■□□□□ 0.82
CLSTN3-204ENST00000535313 MAST3O60307 1309 aa20.17■□□□□ 0.82
CLSTN3-204ENST00000535313 TCP10L2B9ZVM9 353 aa20.16■□□□□ 0.82
CLSTN3-204ENST00000535313 TBC1D8O95759 1140 aa20.16■□□□□ 0.82
CLSTN3-204ENST00000535313 INTS3Q68E01 1043 aaKnown RBP20.16■□□□□ 0.82
CLSTN3-204ENST00000535313 MEIS3Q99687 375 aa20.16■□□□□ 0.82
CLSTN3-204ENST00000535313 MANSC4A6NHS7 340 aaPredicted RBP20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 GNAI3P08754 354 aa20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 ZBTB48P10074 688 aaPredicted RBP20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 IL15P40933 162 aaPredicted RBP20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 ATP2B3Q16720 1220 aa20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 WDR66Q8TBY9 1149 aa20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 CLMNQ96JQ2 1002 aa20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 MRIQ9BWK5 157 aa20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 GNL3LQ9NVN8 582 aaKnown RBP20.15■□□□□ 0.82
CLSTN3-204ENST00000535313 USP2O75604 605 aaPredicted RBP20.14■□□□□ 0.81
CLSTN3-204ENST00000535313 INHBEP58166 350 aa20.14■□□□□ 0.81
CLSTN3-204ENST00000535313 CTU1Q7Z7A3 348 aaKnown RBP20.14■□□□□ 0.81
CLSTN3-204ENST00000535313 ANKRD13AQ8IZ07 590 aa20.14■□□□□ 0.81
CLSTN3-204ENST00000535313 WNK4Q96J92 1243 aa20.14■□□□□ 0.81
CLSTN3-204ENST00000535313 ZDHHC15Q96MV8 337 aa20.14■□□□□ 0.81
CLSTN3-204ENST00000535313 TMOD2Q9NZR1 351 aa20.14■□□□□ 0.81
CLSTN3-204ENST00000535313 ALDH1A1P00352 501 aa20.13■□□□□ 0.81
CLSTN3-204ENST00000535313 TMEM39BQ9GZU3 492 aa20.13■□□□□ 0.81
CLSTN3-204ENST00000535313 COPRSQ9NQ92 184 aa20.13■□□□□ 0.81
CLSTN3-204ENST00000535313 PA2G4Q9UQ80 394 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-204ENST00000535313 ZNF296Q8WUU4 475 aaPredicted RBP20.12■□□□□ 0.81
CLSTN3-204ENST00000535313 FRAT1Q92837 279 aaPredicted RBP20.12■□□□□ 0.81
CLSTN3-204ENST00000535313 TEPSINQ96N21 525 aa20.12■□□□□ 0.81
CLSTN3-204ENST00000535313 GPR25O00155 361 aa20.11■□□□□ 0.81
CLSTN3-204ENST00000535313 NOM1Q5C9Z4 860 aaKnown RBP20.11■□□□□ 0.81
CLSTN3-204ENST00000535313 HHIPL2Q6UWX4 724 aa20.11■□□□□ 0.81
CLSTN3-204ENST00000535313 ATF7IPQ6VMQ6 1270 aa20.11■□□□□ 0.81
CLSTN3-204ENST00000535313 SRGAP3O43295 1099 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 BCAR3O75815 825 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 TRIM27P14373 513 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 CACNB3P54284 484 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 DIEXFQ68CQ4 756 aaKnown RBP20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 APOBEC3HQ6NTF7 200 aaKnown RBP20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 IFNL1Q8IU54 200 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 CDAN1Q8IWY9 1227 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 MIER1Q8N108 512 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 CFHR5Q9BXR6 569 aa20.1■□□□□ 0.81
CLSTN3-204ENST00000535313 SEMA3EO15041 775 aa20.09■□□□□ 0.81
CLSTN3-204ENST00000535313 HNRNPUQ00839 825 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLSTN3-204ENST00000535313 FKBP1CQ5VVH2 108 aa20.09■□□□□ 0.81
CLSTN3-204ENST00000535313 OTUD7BQ6GQQ9 843 aa20.09■□□□□ 0.81
CLSTN3-204ENST00000535313 FAM83AQ86UY5 434 aa20.09■□□□□ 0.81
CLSTN3-204ENST00000535313 ELP3Q9H9T3 547 aa20.09■□□□□ 0.81
CLSTN3-204ENST00000535313 DENND2AQ9ULE3 1009 aa20.09■□□□□ 0.81
CLSTN3-204ENST00000535313 LDHBP07195 334 aaKnown RBP20.08■□□□□ 0.81
CLSTN3-204ENST00000535313 MAP3K9P80192 1104 aa20.08■□□□□ 0.81
CLSTN3-204ENST00000535313 PKN2Q16513 984 aaKnown RBP20.08■□□□□ 0.81
CLSTN3-204ENST00000535313 HOOK2Q96ED9 719 aa20.08■□□□□ 0.81
CLSTN3-204ENST00000535313 CSADQ9Y600 493 aa20.08■□□□□ 0.81
CLSTN3-204ENST00000535313 MYH13Q9UKX3 1938 aa20.08■□□□□ 0.8
CLSTN3-204ENST00000535313 FKTNO75072 461 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 GNAI2P04899 355 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 GJA5P36382 358 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 PHKA1P46020 1223 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 MTX1Q13505 466 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 CLUAP1Q96AJ1 413 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 OPTNQ96CV9 577 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 AKAP2Q9Y2D5 859 aa20.07■□□□□ 0.8
CLSTN3-204ENST00000535313 ADORA1P30542 326 aa20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 RGS19P49795 217 aa20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 MLLT1Q03111 559 aaPredicted RBP20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 ZKSCAN2Q63HK3 967 aa20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 CCDC102BQ68D86 513 aa20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 ZGPATQ8N5A5 531 aaKnown RBP20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 R3HDMLQ9H3Y0 253 aa20.06■□□□□ 0.8
CLSTN3-204ENST00000535313 SALL1Q9NSC2 1324 aa20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 IGF2BP3O00425 579 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 PRDX5P30044 214 aa20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 TIMM10P62072 90 aa20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 VGLL4Q14135 290 aa20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 DIXDC1Q155Q3 683 aa20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 TNNQ9UQP3 1299 aa20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 DAGLAQ9Y4D2 1042 aa20.05■□□□□ 0.8
CLSTN3-204ENST00000535313 ZBTB22O15209 634 aa20.04■□□□□ 0.8
CLSTN3-204ENST00000535313 TFCP2Q12800 502 aa20.04■□□□□ 0.8
CLSTN3-204ENST00000535313 DCAF15Q66K64 600 aa20.04■□□□□ 0.8
CLSTN3-204ENST00000535313 A0A1B0GUL7 405 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms