RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CDHR2Q9BYE9 1310 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 BCORQ6W2J9 1755 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 PDE8AO60658 829 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 CSF1RP07333 972 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 FOXO4P98177 505 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 HDAC1Q13547 482 aaPredicted RBP9.21□□□□□ -0.94
CD44-228ENST00000528455 NFIXQ14938 502 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 UBE3BQ7Z3V4 1068 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 ANKRD44Q8N8A2 993 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 ZNF784Q8NCA9 323 aaPredicted RBP9.21□□□□□ -0.94
CD44-228ENST00000528455 KAZALD1Q96I82 304 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 CCDC136Q96JN2 1154 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 NUDT12Q9BQG2 462 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 LRRFIP2Q9Y608 721 aaKnown RBP9.21□□□□□ -0.94
CD44-228ENST00000528455 UBN2Q6ZU65 1347 aa9.21□□□□□ -0.94
CD44-228ENST00000528455 C4AP0C0L4 1744 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 IRS4O14654 1257 aaPredicted RBP9.2□□□□□ -0.94
CD44-228ENST00000528455 HMMRO75330 724 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 NTSR2O95665 410 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 F12P00748 615 aaPredicted RBP9.2□□□□□ -0.94
CD44-228ENST00000528455 SERPINB2P05120 415 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 CCNYL3P0C7X3 344 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 GTF2E1P29083 439 aaPredicted RBP9.2□□□□□ -0.94
CD44-228ENST00000528455 GGCXP38435 758 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 RABL6Q3YEC7 729 aaPredicted RBP9.2□□□□□ -0.94
CD44-228ENST00000528455 BICDL1Q6ZP65 573 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 SSH3Q8TE77 659 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 EVA1BQ9NVM1 165 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 WWC3Q9ULE0 1092 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 FCF1Q9Y324 198 aaKnown RBP9.2□□□□□ -0.94
CD44-228ENST00000528455 SH3TC1Q8TE82 1336 aa9.2□□□□□ -0.94
CD44-228ENST00000528455 A0A0G2JLW4 131 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 IGHDP01880 384 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 CEP85Q6P2H3 762 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 NBPF5PQ86XG9 351 aaPredicted RBP9.19□□□□□ -0.94
CD44-228ENST00000528455 SIRT2Q8IXJ6 389 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 ANKLE1Q8NAG6 615 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 JARID2Q92833 1246 aaPredicted RBP9.19□□□□□ -0.94
CD44-228ENST00000528455 SUCLG2Q96I99 432 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 NLRP3Q96P20 1036 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 BICC1Q9H694 974 aaKnown RBP9.19□□□□□ -0.94
CD44-228ENST00000528455 DCTPP1Q9H773 170 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 CARMIL3Q8ND23 1372 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 C10orf71Q711Q0 1435 aa9.19□□□□□ -0.94
CD44-228ENST00000528455 POLRMTO00411 1230 aaKnown RBP9.18□□□□□ -0.94
CD44-228ENST00000528455 DPEP1P16444 411 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 SCN7AQ01118 1682 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 DDR1Q08345 913 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 SF3B3Q15393 1217 aaKnown RBP9.18□□□□□ -0.94
CD44-228ENST00000528455 ERFEQ4G0M1 354 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 LMBR1LQ6UX01 489 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 SYNE4Q8N205 404 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 CCDC24Q8N4L8 307 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 TTLL11Q8NHH1 800 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 EPS8L1Q8TE68 723 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 GCC1Q96CN9 775 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 TRIM34Q9BYJ4 488 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 MAP10Q9P2G4 905 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 BCS1LQ9Y276 419 aa9.18□□□□□ -0.94
CD44-228ENST00000528455 KIF13BQ9NQT8 1826 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 KLRG2A4D1S0 409 aaPredicted RBP9.17□□□□□ -0.94
CD44-228ENST00000528455 FAM177BA6PVY3 158 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 SRGAP3O43295 1099 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 KCNH2Q12809 1159 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 NR6A1Q15406 480 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 HSP90AB4PQ58FF6 505 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 EPHA10Q5JZY3 1008 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 PLA2G2CQ5R387 149 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 PTCRAQ6ISU1 281 aaPredicted RBP9.17□□□□□ -0.94
CD44-228ENST00000528455 BRIP1Q9BX63 1249 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 C1orf115Q9H7X2 142 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 PIM2Q9P1W9 311 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 NOP58Q9Y2X3 529 aaKnown RBP9.17□□□□□ -0.94
CD44-228ENST00000528455 MYH3P11055 1940 aa9.17□□□□□ -0.94
CD44-228ENST00000528455 PNMA6EA0A0J9YXQ4 647 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 NPHP1O15259 732 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 RAB11FIP3O75154 756 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 HCLS1P14317 486 aaPredicted RBP9.16□□□□□ -0.94
CD44-228ENST00000528455 KCNA3P22001 575 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 CTHP32929 405 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 CTSWP56202 376 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 ST5P78524 1137 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 CCDC57Q2TAC2 916 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 CCDC152Q4G0S7 254 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 B4GALNT3Q6L9W6 998 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 PRR5LQ6MZQ0 368 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 CENPQQ7L2Z9 268 aaPredicted RBP9.16□□□□□ -0.94
CD44-228ENST00000528455 SMC5Q8IY18 1101 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 CNBD1Q8NA66 436 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 COPRSQ9NQ92 184 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 PDZRN3Q9UPQ7 1066 aa9.16□□□□□ -0.94
CD44-228ENST00000528455 PDE6BP35913 854 aa9.15□□□□□ -0.94
CD44-228ENST00000528455 RFX5P48382 616 aaPredicted RBP9.15□□□□□ -0.94
CD44-228ENST00000528455 IFIT5Q13325 482 aaKnown RBP9.15□□□□□ -0.94
CD44-228ENST00000528455 DALRD3Q5D0E6 543 aaKnown RBP9.15□□□□□ -0.94
CD44-228ENST00000528455 ARHGAP27Q6ZUM4 889 aa9.15□□□□□ -0.94
CD44-228ENST00000528455 RIC1Q4ADV7 1423 aa9.14□□□□□ -0.95
CD44-228ENST00000528455 RTL9Q8NET4 1388 aa9.14□□□□□ -0.95
CD44-228ENST00000528455 KDM2BQ8NHM5 1336 aa9.14□□□□□ -0.95
CD44-228ENST00000528455 ANKRD18BA2A2Z9 1011 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms