RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 KCNA1Q09470 495 aa7.38□□□□□ -1.23
HMGN1-218ENST00000490032 NFIAQ12857 509 aa7.38□□□□□ -1.23
HMGN1-218ENST00000490032 RPS26P11Q5JNZ5 115 aaPredicted RBP7.38□□□□□ -1.23
HMGN1-218ENST00000490032 BEND4Q6ZU67 534 aa7.38□□□□□ -1.23
HMGN1-218ENST00000490032 TRIM56Q9BRZ2 755 aaKnown RBP7.38□□□□□ -1.23
HMGN1-218ENST00000490032 TRAK1Q9UPV9 953 aa7.38□□□□□ -1.23
HMGN1-218ENST00000490032 TMEM238LA0A1B0GVL6 79 aa7.37□□□□□ -1.23
HMGN1-218ENST00000490032 TREHO43280 583 aa7.37□□□□□ -1.23
HMGN1-218ENST00000490032 GAS2O43903 313 aaKnown RBP7.37□□□□□ -1.23
HMGN1-218ENST00000490032 GADD45BO75293 160 aaPredicted RBP7.37□□□□□ -1.23
HMGN1-218ENST00000490032 CTSBP07858 339 aa7.37□□□□□ -1.23
HMGN1-218ENST00000490032 GRM2Q14416 872 aa7.37□□□□□ -1.23
HMGN1-218ENST00000490032 POU4F3Q15319 338 aa7.37□□□□□ -1.23
HMGN1-218ENST00000490032 ZDHHC13Q8IUH4 622 aa7.37□□□□□ -1.23
HMGN1-218ENST00000490032 C12orf50Q8NA57 414 aaPredicted RBP7.37□□□□□ -1.23
HMGN1-218ENST00000490032 DDX54Q8TDD1 881 aaKnown RBP7.37□□□□□ -1.23
HMGN1-218ENST00000490032 EPS8L3Q8TE67 593 aaKnown RBP7.37□□□□□ -1.23
HMGN1-218ENST00000490032 DBNDD2Q9BQY9 259 aa7.37□□□□□ -1.23
HMGN1-218ENST00000490032 MAOBP27338 520 aa7.36□□□□□ -1.23
HMGN1-218ENST00000490032 MAPK1P28482 360 aa7.36□□□□□ -1.23
HMGN1-218ENST00000490032 HP1BP3Q5SSJ5 553 aaPredicted RBP7.36□□□□□ -1.23
HMGN1-218ENST00000490032 TRAIPQ9BWF2 469 aa7.36□□□□□ -1.23
HMGN1-218ENST00000490032 KCNF1Q9H3M0 494 aa7.36□□□□□ -1.23
HMGN1-218ENST00000490032 ZFYVE1Q9HBF4 777 aa7.36□□□□□ -1.23
HMGN1-218ENST00000490032 IVNS1ABPQ9Y6Y0 642 aa7.36□□□□□ -1.23
HMGN1-218ENST00000490032 MAP4P27816 1152 aaKnown RBP7.35□□□□□ -1.23
HMGN1-218ENST00000490032 CD97P48960 835 aa7.35□□□□□ -1.23
HMGN1-218ENST00000490032 SOX4Q06945 474 aaPredicted RBP7.35□□□□□ -1.23
HMGN1-218ENST00000490032 SGO2Q562F6 1265 aa7.35□□□□□ -1.23
HMGN1-218ENST00000490032 C2CD4AQ8NCU7 369 aaPredicted RBP7.35□□□□□ -1.23
HMGN1-218ENST00000490032 ADH5P11766 374 aa7.34□□□□□ -1.23
HMGN1-218ENST00000490032 DRD2P14416 443 aa7.34□□□□□ -1.23
HMGN1-218ENST00000490032 PLCB3Q01970 1234 aa7.34□□□□□ -1.23
HMGN1-218ENST00000490032 AP3B2Q13367 1082 aa7.34□□□□□ -1.23
HMGN1-218ENST00000490032 ENOX2Q16206 610 aaKnown RBP7.34□□□□□ -1.23
HMGN1-218ENST00000490032 SYNGAP1Q96PV0 1343 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 PRR19A6NJB7 356 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 ECEL1O95672 775 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 TGFB1P01137 390 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 FAAP100Q0VG06 881 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 PI16Q6UXB8 463 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 EZH1Q92800 747 aaPredicted RBP7.33□□□□□ -1.24
HMGN1-218ENST00000490032 CORO1BQ9BR76 489 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 NLRP2Q9NX02 1062 aa7.33□□□□□ -1.24
HMGN1-218ENST00000490032 PNMA6FA0A0J9YX94 578 aa7.32□□□□□ -1.24
HMGN1-218ENST00000490032 KIAA1324LA8MWY0 1029 aaPredicted RBP7.32□□□□□ -1.24
HMGN1-218ENST00000490032 COBLO75128 1261 aa7.32□□□□□ -1.24
HMGN1-218ENST00000490032 XRCC5P13010 732 aaKnown RBP7.32□□□□□ -1.24
HMGN1-218ENST00000490032 FMR1Q06787 632 aaKnown RBP eCLIP7.32□□□□□ -1.242e-6■□□□□ 10.3
HMGN1-218ENST00000490032 CDPF1Q6NVV7 123 aa7.32□□□□□ -1.24
HMGN1-218ENST00000490032 NBPF11Q86T75 865 aa7.32□□□□□ -1.24
HMGN1-218ENST00000490032 ASB16Q96NS5 453 aa7.32□□□□□ -1.24
HMGN1-218ENST00000490032 BCO2Q9BYV7 579 aa7.32□□□□□ -1.24
HMGN1-218ENST00000490032 GSX1Q9H4S2 264 aaPredicted RBP7.32□□□□□ -1.24
HMGN1-218ENST00000490032 MED26O95402 600 aa7.31□□□□□ -1.24
HMGN1-218ENST00000490032 SSTR4P31391 388 aa7.31□□□□□ -1.24
HMGN1-218ENST00000490032 ZSCAN29Q8IWY8 852 aaPredicted RBP7.31□□□□□ -1.24
HMGN1-218ENST00000490032 SHKBP1Q8TBC3 707 aa7.31□□□□□ -1.24
HMGN1-218ENST00000490032 PPP4R2Q9NY27 417 aa7.31□□□□□ -1.24
HMGN1-218ENST00000490032 ACTL7BQ9Y614 415 aa7.31□□□□□ -1.24
HMGN1-218ENST00000490032 FAM95CA0A1B0GW59 222 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 RXRBP28702 533 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 USP11P51784 963 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 FCGRTP55899 365 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.3□□□□□ -1.24
HMGN1-218ENST00000490032 INTS5Q6P9B9 1019 aaKnown RBP7.3□□□□□ -1.24
HMGN1-218ENST00000490032 DTHD1Q6ZMT9 781 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 FBF1Q8TES7 1133 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 FBLIM1Q8WUP2 373 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 PCMTD2Q9NV79 361 aa7.3□□□□□ -1.24
HMGN1-218ENST00000490032 PATL2C9JE40 543 aaKnown RBP7.29□□□□□ -1.24
HMGN1-218ENST00000490032 AOC2O75106 756 aa7.29□□□□□ -1.24
HMGN1-218ENST00000490032 AKAP4Q5JQC9 854 aa7.29□□□□□ -1.24
HMGN1-218ENST00000490032 PAOXQ6QHF9 649 aa7.29□□□□□ -1.24
HMGN1-218ENST00000490032 MFSD14AQ96MC6 490 aa7.29□□□□□ -1.24
HMGN1-218ENST00000490032 WDR18Q9BV38 432 aa7.29□□□□□ -1.24
HMGN1-218ENST00000490032 YIPF2Q9BWQ6 316 aa7.29□□□□□ -1.24
HMGN1-218ENST00000490032 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.28□□□□□ -1.24
HMGN1-218ENST00000490032 WDR64B1ANS9 1081 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 F13BP05160 661 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 SPINK2P20155 84 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 GRIK1P39086 918 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 ZNF157P51786 506 aaPredicted RBP7.28□□□□□ -1.24
HMGN1-218ENST00000490032 NFKBIBQ15653 356 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 CPSF6Q16630 551 aaKnown RBP eCLIP7.28□□□□□ -1.24
HMGN1-218ENST00000490032 NXPE4Q6UWF7 544 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 C3orf58Q8NDZ4 430 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 ACSS3Q9H6R3 686 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 RAD18Q9NS91 495 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 KRT82Q9NSB4 513 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 TMEM39AQ9NV64 488 aa7.28□□□□□ -1.24
HMGN1-218ENST00000490032 PPP2R3AQ06190 1150 aa7.27□□□□□ -1.25
HMGN1-218ENST00000490032 PDE3AQ14432 1141 aa7.27□□□□□ -1.25
HMGN1-218ENST00000490032 DYMQ7RTS9 669 aa7.27□□□□□ -1.25
HMGN1-218ENST00000490032 PDZD3Q86UT5 571 aa7.27□□□□□ -1.25
HMGN1-218ENST00000490032 SRCIN1Q9C0H9 1055 aa7.27□□□□□ -1.25
HMGN1-218ENST00000490032 CCDC86Q9H6F5 360 aaKnown RBP7.27□□□□□ -1.25
HMGN1-218ENST00000490032 FAM105AQ9NUU6 356 aa7.27□□□□□ -1.25
HMGN1-218ENST00000490032 PRKAG2Q9UGJ0 569 aa7.27□□□□□ -1.25
HMGN1-218ENST00000490032 GSTP1P09211 210 aaKnown RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms