RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 CEP290O15078 2479 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 TNNI2P48788 182 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 KIF22Q14807 665 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 CCDC57Q2TAC2 916 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 LMBR1LQ6UX01 489 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 CDAN1Q8IWY9 1227 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 TDRD7Q8NHU6 1098 aaKnown RBP21.84■■□□□ 1.09
VIM-204ENST00000478746 OTUD5Q96G74 571 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 TMEM39BQ9GZU3 492 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 CNNM1Q9NRU3 951 aa21.84■■□□□ 1.09
VIM-204ENST00000478746 H0YGN5 161 aa21.83■■□□□ 1.09
VIM-204ENST00000478746 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.83■■□□□ 1.09
VIM-204ENST00000478746 ZNF594Q96JF6 807 aaPredicted RBP21.83■■□□□ 1.09
VIM-204ENST00000478746 OTOFQ9HC10 1997 aa21.83■■□□□ 1.08
VIM-204ENST00000478746 HIBADHP31937 336 aaKnown RBP21.82■■□□□ 1.08
VIM-204ENST00000478746 SH3TC2Q8TF17 1288 aa21.82■■□□□ 1.08
VIM-204ENST00000478746 TLR2O60603 784 aa21.81■■□□□ 1.08
VIM-204ENST00000478746 CRKP46108 304 aa21.81■■□□□ 1.08
VIM-204ENST00000478746 WWC1Q8IX03 1113 aa21.81■■□□□ 1.08
VIM-204ENST00000478746 TRIOBPQ9H2D6 2365 aa21.8■■□□□ 1.08
VIM-204ENST00000478746 A0A1B0GUL6 1792 aa21.8■■□□□ 1.08
VIM-204ENST00000478746 CETPP11597 493 aa21.8■■□□□ 1.08
VIM-204ENST00000478746 GYG1P46976 350 aa21.8■■□□□ 1.08
VIM-204ENST00000478746 LACTBP83111 547 aaPredicted RBP21.8■■□□□ 1.08
VIM-204ENST00000478746 UBE4AQ14139 1066 aa21.8■■□□□ 1.08
VIM-204ENST00000478746 CCDC27Q2M243 656 aa21.8■■□□□ 1.08
VIM-204ENST00000478746 ARHGAP39Q9C0H5 1083 aa21.8■■□□□ 1.08
VIM-204ENST00000478746 SPDYE5A6NIY4 337 aa21.79■■□□□ 1.08
VIM-204ENST00000478746 GNRH1P01148 92 aa21.79■■□□□ 1.08
VIM-204ENST00000478746 EPHA10Q5JZY3 1008 aa21.79■■□□□ 1.08
VIM-204ENST00000478746 FAM84BQ96KN1 310 aaPredicted RBP21.79■■□□□ 1.08
VIM-204ENST00000478746 ZCCHC17Q9NP64 241 aaKnown RBP21.79■■□□□ 1.08
VIM-204ENST00000478746 BTBD19C9JJ37 291 aa21.78■■□□□ 1.08
VIM-204ENST00000478746 PRMT2P55345 433 aa21.78■■□□□ 1.08
VIM-204ENST00000478746 BEND3Q5T5X7 828 aa21.78■■□□□ 1.08
VIM-204ENST00000478746 ERO1BQ86YB8 467 aa21.78■■□□□ 1.08
VIM-204ENST00000478746 CACNA1FO60840 1977 aa21.78■■□□□ 1.08
VIM-204ENST00000478746 F6X3S4 739 aa21.77■■□□□ 1.08
VIM-204ENST00000478746 SNAPC2Q13487 334 aa21.77■■□□□ 1.08
VIM-204ENST00000478746 DPF3Q92784 378 aa21.77■■□□□ 1.08
VIM-204ENST00000478746 IL16Q14005 1332 aa21.77■■□□□ 1.07
VIM-204ENST00000478746 VAMP4O75379 141 aa21.76■■□□□ 1.07
VIM-204ENST00000478746 CHRDL2Q6WN34 429 aa21.76■■□□□ 1.07
VIM-204ENST00000478746 ZKSCAN4Q969J2 545 aaPredicted RBP21.76■■□□□ 1.07
VIM-204ENST00000478746 SNCAIPQ9Y6H5 919 aa21.76■■□□□ 1.07
VIM-204ENST00000478746 GRM8O00222 908 aa21.75■■□□□ 1.07
VIM-204ENST00000478746 IRF6O14896 467 aa21.75■■□□□ 1.07
VIM-204ENST00000478746 HDLBPQ00341 1268 aaKnown RBP21.75■■□□□ 1.07
VIM-204ENST00000478746 VPS37DQ86XT2 251 aa21.75■■□□□ 1.07
VIM-204ENST00000478746 WRNIP1Q96S55 665 aa21.75■■□□□ 1.07
VIM-204ENST00000478746 ECM2O94769 699 aaPredicted RBP21.74■■□□□ 1.07
VIM-204ENST00000478746 CACNB3P54284 484 aa21.74■■□□□ 1.07
VIM-204ENST00000478746 GRIK5Q16478 980 aa21.74■■□□□ 1.07
VIM-204ENST00000478746 HOOK2Q96ED9 719 aa21.74■■□□□ 1.07
VIM-204ENST00000478746 C9orf78Q9NZ63 289 aaPredicted RBP21.74■■□□□ 1.07
VIM-204ENST00000478746 ARAP2Q8WZ64 1704 aa21.73■■□□□ 1.07
VIM-204ENST00000478746 FRAT2O75474 233 aaPredicted RBP21.73■■□□□ 1.07
VIM-204ENST00000478746 CHAF1AQ13111 956 aaPredicted RBP21.73■■□□□ 1.07
VIM-204ENST00000478746 PPIL2Q13356 520 aa21.73■■□□□ 1.07
VIM-204ENST00000478746 MTFR1Q15390 333 aa21.73■■□□□ 1.07
VIM-204ENST00000478746 C17orf99Q6UX52 265 aa21.73■■□□□ 1.07
VIM-204ENST00000478746 TBC1D22AQ8WUA7 517 aa21.73■■□□□ 1.07
VIM-204ENST00000478746 TEKT1Q969V4 418 aa21.73■■□□□ 1.07
VIM-204ENST00000478746 PUS3Q9BZE2 481 aaKnown RBP21.73■■□□□ 1.07
VIM-204ENST00000478746 TMOD2Q9NZR1 351 aa21.73■■□□□ 1.07
VIM-204ENST00000478746 IQSEC3Q9UPP2 1182 aaPredicted RBP21.73■■□□□ 1.07
VIM-204ENST00000478746 ZSWIM8A7E2V4 1837 aa21.72■■□□□ 1.07
VIM-204ENST00000478746 HOXD10P28358 340 aa21.72■■□□□ 1.07
VIM-204ENST00000478746 PSMC4P43686 418 aa21.72■■□□□ 1.07
VIM-204ENST00000478746 FBXO33Q7Z6M2 555 aa21.72■■□□□ 1.07
VIM-204ENST00000478746 FAM83AQ86UY5 434 aa21.72■■□□□ 1.07
VIM-204ENST00000478746 NKX2-3Q8TAU0 364 aa21.72■■□□□ 1.07
VIM-204ENST00000478746 RBM27Q9P2N5 1060 aaKnown RBP21.72■■□□□ 1.07
VIM-204ENST00000478746 SRRDQ9UH36 339 aa21.72■■□□□ 1.07
VIM-204ENST00000478746 MRIQ9BWK5 157 aa21.71■■□□□ 1.07
VIM-204ENST00000478746 CPA4Q9UI42 421 aa21.71■■□□□ 1.07
VIM-204ENST00000478746 RIPOR2Q9Y4F9 1068 aa21.71■■□□□ 1.07
VIM-204ENST00000478746 FANCIQ9NVI1 1328 aa21.71■■□□□ 1.07
VIM-204ENST00000478746 SZT2Q5T011 3432 aa21.71■■□□□ 1.07
VIM-204ENST00000478746 FMNL1O95466 1100 aaPredicted RBP21.7■■□□□ 1.06
VIM-204ENST00000478746 PPATQ06203 517 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 EXOSC9Q06265 439 aaKnown RBP21.7■■□□□ 1.06
VIM-204ENST00000478746 CAVIN4Q5BKX8 364 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 FKBP1CQ5VVH2 108 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 DCAF15Q66K64 600 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 RAET1EQ8TD07 263 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 SHISA4Q96DD7 197 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 TRIM47Q96LD4 638 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 ZDHHC15Q96MV8 337 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 MROH5Q6ZUA9 1318 aa21.7■■□□□ 1.06
VIM-204ENST00000478746 CTGFP29279 349 aa21.69■■□□□ 1.06
VIM-204ENST00000478746 GRK4P32298 578 aa21.69■■□□□ 1.06
VIM-204ENST00000478746 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.69■■□□□ 1.06
VIM-204ENST00000478746 PDHXO00330 501 aa21.68■■□□□ 1.06
VIM-204ENST00000478746 ALDH1L1O75891 902 aa21.68■■□□□ 1.06
VIM-204ENST00000478746 OSBPP22059 807 aa21.68■■□□□ 1.06
VIM-204ENST00000478746 APOBEC3HQ6NTF7 200 aaKnown RBP21.68■■□□□ 1.06
VIM-204ENST00000478746 MIGA2Q7L4E1 593 aa21.68■■□□□ 1.06
VIM-204ENST00000478746 ANKRD23Q86SG2 305 aa21.68■■□□□ 1.06
VIM-204ENST00000478746 HTATIP2Q9BUP3 242 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms