RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 EXOSC9Q06265 439 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 DHX34Q14147 1143 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 ANKRD20A4Q4UJ75 823 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 VWA3BQ502W6 1294 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 ANKRD20A8PQ5CZ79 823 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 ANKRD20A2Q5SQ80 823 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 ANKRD20A1Q5TYW2 823 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 GSDMAQ96QA5 445 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 NUP58Q9BVL2 599 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 MRPS26Q9BYN8 205 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 PAXBP1Q9Y5B6 917 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 POGZQ7Z3K3 1410 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 EVI5O60447 810 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 STX17P56962 302 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 PSMD2Q13200 908 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 EFHBQ8N7U6 833 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 MTBPQ96DY7 904 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 RABEP2Q9H5N1 569 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 NFU1Q9UMS0 254 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 POLA1P09884 1462 aaPredicted RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 A0A1B0GVL5 298 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 STX10O60499 249 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 AP1S2P56377 157 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 RPS6KA2Q15349 733 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 TTF1Q15361 905 aaPredicted RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 OLFML2BQ68BL8 750 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 CAMK1DQ8IU85 385 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 HOMEZQ8IX15 550 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 NDUFAF2Q8N183 169 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 VPS37AQ8NEZ2 397 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 EFHD1Q9BUP0 239 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 ACTR5Q9H9F9 607 aaPredicted RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 STX18Q9P2W9 335 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 G3BP2Q9UN86 482 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 SPG7Q9UQ90 795 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 ESRRGP62508 458 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 PPP1R2P3Q6NXS1 205 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 TTC17Q96AE7 1141 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 NLRP4Q96MN2 994 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 RRP7BPQ9NSQ0 103 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 TNNC2P02585 160 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 CNGA2Q16280 664 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 CEP85LQ5SZL2 805 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 PHLDB3Q6NSJ2 640 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 MPRIPQ6WCQ1 1025 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 SPATS2Q86XZ4 545 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.05□□□□□ -1.44
USF3-202ENST00000478658 RNF34Q969K3 372 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 NEK1Q96PY6 1258 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 NUP88Q99567 741 aaPredicted RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 PARP2Q9UGN5 583 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 PTPRCP08575 1304 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 RGS5O15539 181 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 TTI1O43156 1089 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 CCT4P50991 539 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 CCDC92Q53HC0 331 aaPredicted RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 ADALQ6DHV7 355 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 SND1Q7KZF4 910 aaKnown RBP eCLIP6.05□□□□□ -1.44
USF3-202ENST00000478658 CCDC26Q8TAB7 109 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 CCHCR1Q8TD31 782 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.05□□□□□ -1.44
USF3-202ENST00000478658 FAM204AQ9H8W3 233 aa6.05□□□□□ -1.44
USF3-202ENST00000478658 DNAJC17Q9NVM6 304 aaKnown RBP6.05□□□□□ -1.44
USF3-202ENST00000478658 ACTN4O43707 911 aaKnown RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 TOP1P11387 765 aaKnown RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 GNAQP50148 359 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 SNW1Q13573 536 aaKnown RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 PSMD6Q15008 389 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 KAZNQ674X7 775 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 TADA2BQ86TJ2 420 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 BBS5Q8N3I7 341 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 FBXW4P57775 412 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 BASP1P80723 227 aaKnown RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 PDE4BQ07343 736 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 CAPRIN1Q14444 709 aaKnown RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 CATIPQ7Z7H3 387 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 DTX3LQ8TDB6 740 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 RIOK1Q9BRS2 568 aaKnown RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 TRIM4Q9C037 500 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 PKD2L1Q9P0L9 805 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 ZPR1O75312 459 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 FCHSD2O94868 740 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 SLC4A3P48751 1232 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 MAPK8IP2Q13387 824 aaPredicted RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 LIN9Q5TKA1 542 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 VPS18Q9P253 973 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 STARD3NLO95772 234 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 MCM5P33992 734 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 TP53BP2Q13625 1128 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 LZICQ8WZA0 190 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 PAPOLBQ9NRJ5 636 aaKnown RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 ABCF3Q9NUQ8 709 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.04□□□□□ -1.44
USF3-202ENST00000478658 SESN1Q9Y6P5 492 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 SERPINB2P05120 415 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 PLCB3Q01970 1234 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 PTPN14Q15678 1187 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 SOX13Q9UN79 622 aa6.04□□□□□ -1.44
USF3-202ENST00000478658 BRD4O60885 1362 aaPredicted RBP6.04□□□□□ -1.44
USF3-202ENST00000478658 HNRNPRO43390 633 aaKnown RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms