RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 BCL9O00512 1426 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 H7C1W4 665 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 PES1O00541 588 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 ZBTB48P10074 688 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 MKRN4PQ13434 485 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 U3KPZ7 1027 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 ANO9A1A5B4 782 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 NR1I2O75469 434 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 APOBRQ0VD83 1088 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 LARP1Q6PKG0 1096 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 NGDNQ8NEJ9 315 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 RASSF8Q8NHQ8 419 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 NAA15Q9BXJ9 866 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 H3BQV1 296 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 HOXA7P31268 230 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 FNTAP49354 379 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 IFFO2Q5TF58 517 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 MCM10Q7L590 875 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 CLASRPQ8N2M8 674 aaKnown RBP6.2□□□□□ -1.42
SYNE1-220ENST00000471834 PLA2G12BQ9BX93 195 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 SENP2Q9HC62 589 aa6.2□□□□□ -1.42
SYNE1-220ENST00000471834 RAPGEF3O95398 923 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 UBTFL1P0CB47 393 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 KIF23Q02241 960 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 ICE2Q659A1 982 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 RASGRP2Q7LDG7 609 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 KCNG4Q8TDN1 519 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 RPGRIP1Q96KN7 1286 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 STK31Q9BXU1 1019 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 WDR70Q9NW82 654 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 CLIP2Q9UDT6 1046 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 TARSL2A2RTX5 802 aaKnown RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 PPFIA4O75335 1185 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 LIFRP42702 1097 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 MORC3Q14149 939 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 MEA1Q16626 185 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 PAPD7Q5XG87 772 aaKnown RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 FBXO31Q5XUX0 539 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 C3orf20Q8ND61 904 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 HELLSQ9NRZ9 838 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 DBNLQ9UJU6 430 aaKnown RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 DCCP43146 1447 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 DHX16O60231 1041 aaKnown RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 TRPM3Q9HCF6 1732 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 SPDYE4A6NLX3 237 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 A6NNZ2 444 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 FGRP09769 529 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 TUBB8Q3ZCM7 444 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 NOM1Q5C9Z4 860 aaKnown RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 AKAP4Q5JQC9 854 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 LARP1BQ659C4 914 aaKnown RBP6.19□□□□□ -1.42
SYNE1-220ENST00000471834 TAX1BP1Q86VP1 789 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 C19orf44Q9H6X5 657 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 TOMM22Q9NS69 142 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 GNAT3A8MTJ3 354 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 CIAO1O76071 339 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 ERCC6LQ2NKX8 1250 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 AIDAQ96BJ3 306 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 ADGRG1Q9Y653 693 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 C10orf71Q711Q0 1435 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 F6X3S4 739 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 H3BQF6 201 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 PSMD14O00487 310 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 ANTXR2P58335 489 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 CBX1P83916 185 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 BLOC1S2Q6QNY1 142 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 MAP3K14Q99558 947 aa6.19□□□□□ -1.42
SYNE1-220ENST00000471834 ABCB11O95342 1321 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 ELL2O00472 640 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-220ENST00000471834 RGL2O15211 777 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 FIBPO43427 364 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 RAD21O60216 631 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 HMOX1P09601 288 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 DCTN1Q14203 1278 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 TTYH3Q9C0H2 523 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 FAM217BQ9NTX9 383 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-220ENST00000471834 MAGEA9P43362 315 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 NKX1-1Q15270 411 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-220ENST00000471834 LRRN4CLQ8ND94 238 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 DNAJC25Q9H1X3 360 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 PATL2C9JE40 543 aaKnown RBP6.18□□□□□ -1.42
SYNE1-220ENST00000471834 PTPREP23469 700 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 ELF2Q15723 593 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 TPD52L1Q16890 204 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-220ENST00000471834 SPATA32Q96LK8 384 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 COL1A1P02452 1464 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-220ENST00000471834 PKD1L3Q7Z443 1732 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 POTEB2H3BUK9 544 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 CUTAO60888 179 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 NLRP12P59046 1061 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 ZNF592Q92610 1267 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 TNMDQ9H2S6 317 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 CDC23Q9UJX2 597 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 GRIN2DO15399 1336 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 FOXO3O43524 673 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 NPY5RQ15761 445 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 C6orf89Q6UWU4 347 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 TNFRSF25Q93038 417 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 RASSF4Q9H2L5 321 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 162.3 ms