RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 ARHGEF15O94989 841 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 ZC3H6P61129 1189 aaKnown RBP7.15□□□□□ -1.26
VPS41-211ENST00000466017 LMOD3Q0VAK6 560 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 AMOTQ4VCS5 1084 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 ARSJQ5FYB0 599 aaPredicted RBP7.15□□□□□ -1.26
VPS41-211ENST00000466017 NBPF6Q5VWK0 638 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 CAPN12Q6ZSI9 719 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 CCDC146Q8IYE0 955 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 CCDC82Q8N4S0 544 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 ANKRD24Q8TF21 1146 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 HSH2DQ96JZ2 352 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 NBPF4Q96M43 638 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 MAPK8IP3Q9UPT6 1336 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 DCDC2BA2VCK2 349 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 CARNS1A5YM72 827 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 FAM83GA6ND36 823 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 PPP1R12BO60237 982 aaPredicted RBP7.14□□□□□ -1.27
VPS41-211ENST00000466017 LTN1O94822 1766 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 HMOX1P09601 288 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 RIPK4P57078 832 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 SRSF11Q05519 484 aaKnown RBP7.14□□□□□ -1.27
VPS41-211ENST00000466017 CALD1Q05682 793 aaKnown RBP7.14□□□□□ -1.27
VPS41-211ENST00000466017 TNP2Q05952 138 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 LRRC69Q6ZNQ3 347 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 KIAA0232Q92628 1395 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 GMCL1Q96IK5 515 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 PHACTR3Q96KR7 559 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 PRIMPOLQ96LW4 560 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 C2orf49Q9BVC5 232 aaPredicted RBP7.14□□□□□ -1.27
VPS41-211ENST00000466017 CARD10Q9BWT7 1032 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 PHACTR1Q9C0D0 580 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 MBIPQ9NS73 344 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 ZDHHC3Q9NYG2 299 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 JCADQ9P266 1359 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 KLF15Q9UIH9 416 aa7.14□□□□□ -1.27
VPS41-211ENST00000466017 NOVA2Q9UNW9 492 aaKnown RBP7.14□□□□□ -1.27
VPS41-211ENST00000466017 COL16A1Q07092 1604 aaPredicted RBP7.13□□□□□ -1.27
VPS41-211ENST00000466017 SPATA31A6Q5VVP1 1343 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 WDR17Q8IZU2 1322 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 CELA2BP08218 269 aaPredicted RBP7.13□□□□□ -1.27
VPS41-211ENST00000466017 CSB-PGBD3P0DP91 1061 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 PLEKHO1Q53GL0 409 aaPredicted RBP7.13□□□□□ -1.27
VPS41-211ENST00000466017 DUSP27Q5VZP5 1158 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 PGBD3Q8N328 593 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 CFHR5Q9BXR6 569 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 PRDM11Q9NQV5 511 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 BABAM1Q9NWV8 329 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 STK17AQ9UEE5 414 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 PHLPP1O60346 1717 aa7.13□□□□□ -1.27
VPS41-211ENST00000466017 CAMTA1Q9Y6Y1 1673 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 CT47B1P0C2W7 299 aaPredicted RBP7.12□□□□□ -1.27
VPS41-211ENST00000466017 ZNF853P0CG23 659 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 MAPTP10636 758 aaKnown RBP7.12□□□□□ -1.27
VPS41-211ENST00000466017 CD33P20138 364 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 MX2P20592 715 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 SCNN1AP37088 669 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 GSK3AP49840 483 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 PSMA6P60900 246 aaKnown RBP7.12□□□□□ -1.27
VPS41-211ENST00000466017 PIP4K2BP78356 416 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 MTHFSDQ2M296 383 aaKnown RBP7.12□□□□□ -1.27
VPS41-211ENST00000466017 AEBP1Q8IUX7 1158 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 ALDH16A1Q8IZ83 802 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 FAM200AQ8TCP9 573 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 NGLY1Q96IV0 654 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 BCS1LQ9Y276 419 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 LMO7Q8WWI1 1683 aa7.12□□□□□ -1.27
VPS41-211ENST00000466017 RNF123Q5XPI4 1314 aa7.11□□□□□ -1.27
VPS41-211ENST00000466017 ATXN7O15265 892 aaPredicted RBP7.11□□□□□ -1.27
VPS41-211ENST00000466017 WEE1P30291 646 aa7.11□□□□□ -1.27
VPS41-211ENST00000466017 SFSWAPQ12872 951 aaKnown RBP7.11□□□□□ -1.27
VPS41-211ENST00000466017 AKAP4Q5JQC9 854 aa7.11□□□□□ -1.27
VPS41-211ENST00000466017 EFHC2Q5JST6 749 aa7.11□□□□□ -1.27
VPS41-211ENST00000466017 BICDL1Q6ZP65 573 aa7.11□□□□□ -1.27
VPS41-211ENST00000466017 LTV1Q96GA3 475 aaPredicted RBP7.11□□□□□ -1.27
VPS41-211ENST00000466017 MYH16Q9H6N6 1097 aa7.11□□□□□ -1.27
VPS41-211ENST00000466017 THRAP3Q9Y2W1 955 aaKnown RBP7.11□□□□□ -1.27
VPS41-211ENST00000466017 PCDHGC4Q9Y5F7 938 aa7.11□□□□□ -1.27
VPS41-211ENST00000466017 FAM208AQ9UK61 1670 aaKnown RBP7.11□□□□□ -1.27
VPS41-211ENST00000466017 COL5A2P05997 1499 aaPredicted RBP7.11□□□□□ -1.27
VPS41-211ENST00000466017 ABCA3Q99758 1704 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 GNAT3A8MTJ3 354 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 KHNYNO15037 678 aaKnown RBP7.1□□□□□ -1.27
VPS41-211ENST00000466017 TATP17735 454 aaPredicted RBP7.1□□□□□ -1.27
VPS41-211ENST00000466017 FGFR3P22607 806 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 EVA1CP58658 441 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 GNAI1P63096 354 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 CHRNA2Q15822 529 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 TMEM164Q5U3C3 297 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 FOXR1Q6PIV2 292 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 NLRP8Q86W28 1048 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 SVOPQ8N4V2 548 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 C1orf216Q8TAB5 229 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 ZNF428Q96B54 188 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 TRERF1Q96PN7 1200 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 IFT57Q9NWB7 429 aa7.1□□□□□ -1.27
VPS41-211ENST00000466017 COL14A1Q05707 1796 aaKnown RBP7.1□□□□□ -1.27
VPS41-211ENST00000466017 SHISA8B8ZZ34 492 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 CHL1O00533 1208 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 EFSO43281 561 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 PRMT3O60678 531 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms