RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 RTEL1Q9NZ71 1219 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 NAP1L2Q9ULW6 460 aaPredicted RBP19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 COL5A3P25940 1745 aaPredicted RBP19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 ZNF831Q5JPB2 1677 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 FOXP2O15409 715 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 NEMFO60524 1076 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 ME1P48163 572 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 GUCY1B3Q02153 619 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 LRRFIP1Q32MZ4 808 aaKnown RBP19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 MRPS27Q92552 414 aaKnown RBP19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 CTNNA3Q9UI47 895 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 BRWD3Q6RI45 1802 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 RREB1Q92766 1687 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 A0A1W2PQ27 194 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 A0A1W2PQ64 194 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 A0A1W2PQD8 194 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 FMR1NBQ8N0W7 255 aaPredicted RBP19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 ZFYP08048 801 aaPredicted RBP19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 TNNT1P13805 278 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 SYCP1Q15431 976 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 LRRC8AQ8IWT6 810 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 LINC00116Q8NCU8 138 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 CEP126Q9P2H0 1117 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 FBXO3Q9UK99 471 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 PCDHA7Q9UN72 937 aa19.12■□□□□ 0.65
CLCNKA-203ENST00000439316 BECN2A8MW95 431 aa19.11■□□□□ 0.65
CLCNKA-203ENST00000439316 RBM6P78332 1123 aaKnown RBP19.11■□□□□ 0.65
CLCNKA-203ENST00000439316 TRIM28Q13263 835 aaKnown RBP19.11■□□□□ 0.65
CLCNKA-203ENST00000439316 ADALQ6DHV7 355 aa19.11■□□□□ 0.65
CLCNKA-203ENST00000439316 CEP57L1Q8IYX8 460 aa19.11■□□□□ 0.65
CLCNKA-203ENST00000439316 ABCC12Q96J65 1359 aa19.11■□□□□ 0.65
CLCNKA-203ENST00000439316 PPFIA3O75145 1194 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 GPTP24298 496 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 MB21D2Q8IYB1 491 aaPredicted RBP19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 PDCL2Q8N4E4 241 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 PKNOX2Q96KN3 472 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 GPHNQ9NQX3 736 aaPredicted RBP19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 ANKRD36CQ5JPF3 1778 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 ERVV-1B6SEH8 477 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 FKBP4Q02790 459 aaKnown RBP eCLIP19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 IMMTQ16891 758 aaKnown RBP19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 CCDC158Q5M9N0 1113 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 PPP4R3BQ5MIZ7 849 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 TTC39AQ5SRH9 613 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 ZNF772Q68DY9 489 aaPredicted RBP19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 LINC00301Q8NCQ3 95 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 AKAP2Q9Y2D5 859 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 PAXBP1Q9Y5B6 917 aa19.1■□□□□ 0.65
CLCNKA-203ENST00000439316 ADORA1P30542 326 aa19.09■□□□□ 0.65
CLCNKA-203ENST00000439316 HSP90AB3PQ58FF7 597 aa19.09■□□□□ 0.65
CLCNKA-203ENST00000439316 XAGE2Q96GT9 111 aa19.09■□□□□ 0.65
CLCNKA-203ENST00000439316 HPS5Q9UPZ3 1129 aa19.09■□□□□ 0.65
CLCNKA-203ENST00000439316 MYH7P12883 1935 aa19.09■□□□□ 0.65
CLCNKA-203ENST00000439316 A0A087WWV3 80 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 PRC1O43663 620 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 YEATS4O95619 227 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 TPD52L1Q16890 204 aaPredicted RBP19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 KRT27Q7Z3Y8 459 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 C8orf76Q96K31 380 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 NAT10Q9H0A0 1025 aaKnown RBP19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 POLR3EQ9NVU0 708 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 C4AP0C0L4 1744 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 C4BP0C0L5 1744 aa19.08■□□□□ 0.65
CLCNKA-203ENST00000439316 NEDD4P46934 1319 aa19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 WDR19Q8NEZ3 1342 aa19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 NCBP1Q09161 790 aaKnown RBP19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 ARID5BQ14865 1188 aa19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 CCDC57Q2TAC2 916 aa19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 AOPEPQ8N6M6 819 aa19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 KCNG4Q8TDN1 519 aa19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 APPBP2Q92624 585 aa19.08■□□□□ 0.64
CLCNKA-203ENST00000439316 DHX16O60231 1041 aaKnown RBP19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 FGAP02671 866 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 ANTXR2P58335 489 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 HAND2P61296 217 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 CCZ1BP86790 482 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 CCZ1P86791 482 aaPredicted RBP19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 WASHC4Q2M389 1173 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 BRAPQ7Z569 592 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 NLRP10Q86W26 655 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 FBXO18Q8NFZ0 1043 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 FAM89AQ96GI7 184 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 CLIC4Q9Y696 253 aa19.07■□□□□ 0.64
CLCNKA-203ENST00000439316 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 KLF18A0A0U1RQI7 1052 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 GOLGA8BA8MQT2 603 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 NDUFA8P51970 172 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 SCARF1Q14162 830 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 STK38Q15208 465 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 ATP2B3Q16720 1220 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 GORABQ5T7V8 394 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 OTUD7BQ6GQQ9 843 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 BPIFA3Q9BQP9 254 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 PLA2G12BQ9BX93 195 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 BCL11BQ9C0K0 894 aaPredicted RBP19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 CCNL1Q9UK58 526 aaPredicted RBP19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 LY75O60449 1722 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 RIC1Q4ADV7 1423 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 A0A1B0GVL5 298 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 CCDC69A6NI79 296 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms