RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 AATFQ9NY61 560 aaKnown RBP eCLIP16.26■□□□□ 0.194e-6■□□□□ 10.1
SCAF4-202ENST00000399804 SEC63Q9UGP8 760 aaKnown RBP16.26■□□□□ 0.19
SCAF4-202ENST00000399804 MAST3O60307 1309 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 SERPINC1P01008 464 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 TPM2P07951 284 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 PDILTQ8N807 584 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 RBM17Q96I25 401 aaKnown RBP16.25■□□□□ 0.19
SCAF4-202ENST00000399804 BIN1O00499 593 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 PICALMQ13492 652 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 FILIP1Q7Z7B0 1213 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 CDK5RAP3Q96JB5 506 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 ANO10Q9NW15 660 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 MARCKSP29966 332 aaPredicted RBP16.25■□□□□ 0.19
SCAF4-202ENST00000399804 CDC37L1Q7L3B6 337 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 MYL10Q9BUA6 226 aa16.25■□□□□ 0.19
SCAF4-202ENST00000399804 RGS12O14924 1447 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 CTAGE5O15320 804 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 APBA3O96018 575 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.24■□□□□ 0.19
SCAF4-202ENST00000399804 TMEM87BQ96K49 555 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 TRIM37O94972 964 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 HOMER1Q86YM7 354 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 SEPT12Q8IYM1 358 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 LLPHQ9BRT6 129 aaKnown RBP16.24■□□□□ 0.19
SCAF4-202ENST00000399804 WWC3Q9ULE0 1092 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 PATL2C9JE40 543 aaKnown RBP16.24■□□□□ 0.19
SCAF4-202ENST00000399804 ZNF165P49910 485 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 MARCH10Q8NA82 808 aaPredicted RBP16.24■□□□□ 0.19
SCAF4-202ENST00000399804 GGA1Q9UJY5 639 aa16.24■□□□□ 0.19
SCAF4-202ENST00000399804 CUL4AQ13619 759 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 CCDC96Q2M329 555 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 GTF3C6Q969F1 213 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 KAZALD1Q96I82 304 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 TCEAL9Q9UHQ7 104 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 CCDC194A0A1B0GVG4 234 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 GADD45BO75293 160 aaPredicted RBP16.23■□□□□ 0.19
SCAF4-202ENST00000399804 R3HCC1Q9Y3T6 440 aaKnown RBP16.23■□□□□ 0.19
SCAF4-202ENST00000399804 UBE3CQ15386 1083 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 CNNM3Q8NE01 707 aa16.23■□□□□ 0.19
SCAF4-202ENST00000399804 KCNG4Q8TDN1 519 aa16.22■□□□□ 0.19
SCAF4-202ENST00000399804 PUS7LQ9H0K6 701 aaKnown RBP16.22■□□□□ 0.19
SCAF4-202ENST00000399804 IFNL3Q8IZI9 196 aa16.22■□□□□ 0.19
SCAF4-202ENST00000399804 KDM6AO15550 1401 aaPredicted RBP16.22■□□□□ 0.19
SCAF4-202ENST00000399804 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.22■□□□□ 0.19
SCAF4-202ENST00000399804 M0R2C6 588 aa16.22■□□□□ 0.19
SCAF4-202ENST00000399804 UBE4AQ14139 1066 aa16.22■□□□□ 0.19
SCAF4-202ENST00000399804 ZSCAN30Q86W11 494 aa16.22■□□□□ 0.19
SCAF4-202ENST00000399804 WDR66Q8TBY9 1149 aa16.22■□□□□ 0.19
SCAF4-202ENST00000399804 SPATA31A1Q5TZJ5 1347 aa16.22■□□□□ 0.19
SCAF4-202ENST00000399804 ISM2Q6H9L7 571 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 ATG9AQ7Z3C6 839 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 SDR42E1Q8WUS8 393 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 NRXN3Q9Y4C0 1643 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 PXDNLA1KZ92 1463 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 SPTLC2O15270 562 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 AKNAD1Q5T1N1 836 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 CLEC4GQ6UXB4 293 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 SMIM5Q71RC9 77 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 OVOS2A0A0G2JMS6 1433 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 MTMR6Q9Y217 621 aa16.21■□□□□ 0.19
SCAF4-202ENST00000399804 HLA-DOAP06340 250 aa16.21■□□□□ 0.18
SCAF4-202ENST00000399804 MRPS27Q92552 414 aaKnown RBP16.21■□□□□ 0.18
SCAF4-202ENST00000399804 PHKBQ93100 1093 aa16.21■□□□□ 0.18
SCAF4-202ENST00000399804 LARGE1O95461 756 aa16.2■□□□□ 0.18
SCAF4-202ENST00000399804 MCAMP43121 646 aa16.2■□□□□ 0.18
SCAF4-202ENST00000399804 SAP30BPQ9UHR5 308 aaKnown RBP16.2■□□□□ 0.18
SCAF4-202ENST00000399804 PLCG2P16885 1265 aa16.2■□□□□ 0.18
SCAF4-202ENST00000399804 TEX11Q8IYF3 940 aa16.2■□□□□ 0.18
SCAF4-202ENST00000399804 DACH1Q9UI36 760 aa16.2■□□□□ 0.18
SCAF4-202ENST00000399804 UTYO14607 1347 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 USP17L12C9JPN9 530 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 USP17L21D6R901 530 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 RPS6KA4O75676 772 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 ADCY5O95622 1261 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 ADD2P35612 726 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 SYKP43405 635 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 EIF5P55010 431 aaKnown RBP16.19■□□□□ 0.18
SCAF4-202ENST00000399804 CDHR2Q9BYE9 1310 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 RASGRF1Q13972 1273 aa16.19■□□□□ 0.18
SCAF4-202ENST00000399804 ZNF274Q96GC6 653 aaPredicted RBP16.18■□□□□ 0.18
SCAF4-202ENST00000399804 PIH1D3Q9NQM4 214 aaKnown RBP16.18■□□□□ 0.18
SCAF4-202ENST00000399804 SMTNL1A8MU46 457 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 ADD1P35611 737 aaKnown RBP16.18■□□□□ 0.18
SCAF4-202ENST00000399804 FILIP1LQ4L180 1135 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 KLHL10Q6JEL2 608 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 TMEM63CQ9P1W3 806 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 AFF2P51816 1311 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 SSBP05455 408 aaKnown RBP eCLIP16.18■□□□□ 0.18
SCAF4-202ENST00000399804 RFX5P48382 616 aaPredicted RBP16.18■□□□□ 0.18
SCAF4-202ENST00000399804 BRAPQ7Z569 592 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 IL25Q9H293 177 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 ZNF804BA4D1E1 1349 aa16.18■□□□□ 0.18
SCAF4-202ENST00000399804 PFKFB2O60825 505 aa16.17■□□□□ 0.18
SCAF4-202ENST00000399804 CHGBP05060 677 aa16.17■□□□□ 0.18
SCAF4-202ENST00000399804 CALM1P0DP23 149 aa16.17■□□□□ 0.18
SCAF4-202ENST00000399804 CALM2P0DP24 149 aa16.17■□□□□ 0.18
SCAF4-202ENST00000399804 CALM3P0DP25 149 aa16.17■□□□□ 0.18
SCAF4-202ENST00000399804 KRT27Q7Z3Y8 459 aa16.17■□□□□ 0.18
SCAF4-202ENST00000399804 RTL9Q8NET4 1388 aa16.17■□□□□ 0.18
SCAF4-202ENST00000399804 DHX8Q14562 1220 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms