RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 LRRC59Q96AG4 307 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 ROBO2Q9HCK4 1378 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 SLC3A2P08195 630 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 HOXC9P31274 260 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 HAND2P61296 217 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 RAD51AP2Q09MP3 1159 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 NSUN7Q8NE18 718 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 MRPS27Q92552 414 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 KCNB2Q92953 911 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 ZNF396Q96N95 335 aaPredicted RBP11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 TSKSQ9UJT2 592 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 RCOR1Q9UKL0 485 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 CLIC4Q9Y696 253 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 ARHGEF10O15013 1369 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 ADCY9O60503 1353 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 H2AFXP16104 143 aaPredicted RBP11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 OAS2P29728 719 aaKnown RBP11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 GUCA2AQ02747 115 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 ZNF530Q6P9A1 599 aaPredicted RBP11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 STOX1Q6ZVD7 989 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 SLC39A7Q92504 469 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 UBR1Q8IWV7 1749 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 CARNS1A5YM72 827 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 GRM8O00222 908 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 HOXB3P14651 431 aaPredicted RBP11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 LMAN1P49257 510 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 GNG11P61952 73 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 ETF1P62495 437 aaKnown RBP11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 DPF2Q92785 391 aa11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 CEP170BQ9Y4F5 1589 aaPredicted RBP11.44□□□□□ -0.58
PTCHD4-202ENST00000398738 CTDNEP1O95476 244 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 KIF2AO00139 706 aaPredicted RBP11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 TPM4P67936 248 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 FANCCQ00597 558 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 TFCP2Q12800 502 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 TTLL5Q6EMB2 1281 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 DBNDD2Q9BQY9 259 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 KIAA1468Q9P260 1216 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 ORC3Q9UBD5 711 aaPredicted RBP11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 DBF4Q9UBU7 674 aaPredicted RBP11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 UBASH3AP57075 661 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 KRT32Q14532 448 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 KARSQ15046 597 aaKnown RBP11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 EPHA10Q5JZY3 1008 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 CCDC191Q8NCU4 936 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 KAZALD1Q96I82 304 aa11.43□□□□□ -0.58
PTCHD4-202ENST00000398738 TMEM232C9JQI7 657 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 ANKRD65E5RJM6 399 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 GOLIM4O00461 696 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 SASH3O75995 380 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 NDUFV2P19404 249 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 ENGASEQ8NFI3 743 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 PCMTD1Q96MG8 357 aaPredicted RBP11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 HMG20BQ9P0W2 317 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 DBNLQ9UJU6 430 aaKnown RBP11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 SLC39A6Q13433 755 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 HSP90AB3PQ58FF7 597 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 KSR2Q6VAB6 950 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 DESI2Q9BSY9 194 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 LHX6Q9UPM6 363 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 USP42Q9H9J4 1324 aaKnown RBP11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 SBNO1A3KN83 1393 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 TMEM131LA2VDJ0 1609 aa11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 NPHP4O75161 1426 aaPredicted RBP11.42□□□□□ -0.58
PTCHD4-202ENST00000398738 C7P10643 843 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 PDIA4P13667 645 aaKnown RBP11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 SMC1AQ14683 1233 aaKnown RBP11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 NBPF6Q5VWK0 638 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 SYNE3Q6ZMZ3 975 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 FMR1NBQ8N0W7 255 aaPredicted RBP11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 CCDC150Q8NCX0 1101 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 NBPF4Q96M43 638 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 L2HGDHQ9H9P8 463 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 LCMT1Q9UIC8 334 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 COL15A1P39059 1388 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 ATP5J2-PTCD1G3V325 749 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 FANCGO15287 622 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 PTCD1O75127 700 aaKnown RBP11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 ZNF202O95125 648 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 MYD88Q99836 296 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 FEZ2Q9UHY8 353 aaPredicted RBP11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 PHACTR2O75167 634 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 SPECC1Q5M775 1068 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 IRX2Q9BZI1 471 aaPredicted RBP11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 OSBPL5Q9H0X9 879 aaPredicted RBP11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 RSPH14Q9UHP6 348 aa11.41□□□□□ -0.58
PTCHD4-202ENST00000398738 USP6P35125 1406 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 A2ML1A8K2U0 1454 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 DLC1Q96QB1 1528 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 SLC34A2O95436 690 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 TOP1P11387 765 aaKnown RBP11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 RXRAP19793 462 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 ZSCAN26Q16670 478 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 DHX32Q7L7V1 743 aaKnown RBP11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 WDR24Q96S15 920 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 FAM53CQ9NYF3 392 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 PUF60Q9UHX1 559 aaKnown RBP11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 ADKP55263 362 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms