RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 KAZALD1Q96I82 304 aa19.48■□□□□ 0.71
CHMP3-202ENST00000393773 PUS3Q9BZE2 481 aaKnown RBP19.48■□□□□ 0.71
CHMP3-202ENST00000393773 ALDH1L1O75891 902 aa19.47■□□□□ 0.71
CHMP3-202ENST00000393773 SP3Q02447 781 aa19.47■□□□□ 0.71
CHMP3-202ENST00000393773 DZIP1LQ8IYY4 767 aaKnown RBP19.47■□□□□ 0.71
CHMP3-202ENST00000393773 BRI3BPQ8WY22 251 aa19.47■□□□□ 0.71
CHMP3-202ENST00000393773 SUCLG2Q96I99 432 aa19.47■□□□□ 0.71
CHMP3-202ENST00000393773 FAM84BQ96KN1 310 aaPredicted RBP19.47■□□□□ 0.71
CHMP3-202ENST00000393773 TMEM39BQ9GZU3 492 aa19.47■□□□□ 0.71
CHMP3-202ENST00000393773 EFCC1Q9HA90 598 aa19.47■□□□□ 0.71
CHMP3-202ENST00000393773 HIBADHP31937 336 aaKnown RBP19.46■□□□□ 0.71
CHMP3-202ENST00000393773 CRKP46108 304 aa19.46■□□□□ 0.71
CHMP3-202ENST00000393773 VGLL4Q14135 290 aa19.46■□□□□ 0.71
CHMP3-202ENST00000393773 GRIK5Q16478 980 aa19.46■□□□□ 0.71
CHMP3-202ENST00000393773 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.46■□□□□ 0.71
CHMP3-202ENST00000393773 GCC1Q96CN9 775 aa19.46■□□□□ 0.71
CHMP3-202ENST00000393773 MRS2Q9HD23 443 aa19.46■□□□□ 0.71
CHMP3-202ENST00000393773 C9orf78Q9NZ63 289 aaPredicted RBP19.45■□□□□ 0.7
CHMP3-202ENST00000393773 SALL2Q9Y467 1007 aaPredicted RBP19.45■□□□□ 0.7
CHMP3-202ENST00000393773 CEP290O15078 2479 aa19.45■□□□□ 0.7
CHMP3-202ENST00000393773 TCP10L2B9ZVM9 353 aa19.44■□□□□ 0.7
CHMP3-202ENST00000393773 SRCIN1Q9C0H9 1055 aa19.44■□□□□ 0.7
CHMP3-202ENST00000393773 RIPOR2Q9Y4F9 1068 aa19.44■□□□□ 0.7
CHMP3-202ENST00000393773 UTYO14607 1347 aa19.44■□□□□ 0.7
CHMP3-202ENST00000393773 DOCK2Q92608 1830 aa19.44■□□□□ 0.7
CHMP3-202ENST00000393773 CCL15-CCL14A0A0B4J2E2 113 aa19.43■□□□□ 0.7
CHMP3-202ENST00000393773 CCL15Q16663 113 aa19.43■□□□□ 0.7
CHMP3-202ENST00000393773 ZNF333Q96JL9 665 aa19.43■□□□□ 0.7
CHMP3-202ENST00000393773 MROH5Q6ZUA9 1318 aa19.43■□□□□ 0.7
CHMP3-202ENST00000393773 RPAP1Q9BWH6 1393 aaPredicted RBP19.43■□□□□ 0.7
CHMP3-202ENST00000393773 NBPF7P0C2Y1 421 aaPredicted RBP19.42■□□□□ 0.7
CHMP3-202ENST00000393773 EN2P19622 333 aaPredicted RBP19.42■□□□□ 0.7
CHMP3-202ENST00000393773 TNNI2P48788 182 aa19.42■□□□□ 0.7
CHMP3-202ENST00000393773 TAF1CQ15572 869 aaPredicted RBP19.42■□□□□ 0.7
CHMP3-202ENST00000393773 RABL6Q3YEC7 729 aaPredicted RBP19.42■□□□□ 0.7
CHMP3-202ENST00000393773 SLC4A10Q6U841 1118 aa19.42■□□□□ 0.7
CHMP3-202ENST00000393773 FBXO33Q7Z6M2 555 aa19.42■□□□□ 0.7
CHMP3-202ENST00000393773 FAM43AQ8N2R8 423 aa19.42■□□□□ 0.7
CHMP3-202ENST00000393773 VGLL2Q8N8G2 317 aa19.42■□□□□ 0.7
CHMP3-202ENST00000393773 OTUD5Q96G74 571 aa19.42■□□□□ 0.7
CHMP3-202ENST00000393773 IQSEC3Q9UPP2 1182 aaPredicted RBP19.42■□□□□ 0.7
CHMP3-202ENST00000393773 SNCAIPQ9Y6H5 919 aa19.42■□□□□ 0.7
CHMP3-202ENST00000393773 MGAMO43451 1857 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 SPDYE5A6NIY4 337 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 GTF2A2P52657 109 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 CACNB3P54284 484 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 MAP3K9P80192 1104 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 HABP4Q5JVS0 413 aaKnown RBP19.41■□□□□ 0.7
CHMP3-202ENST00000393773 ANKRD44Q8N8A2 993 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 BICC1Q9H694 974 aaKnown RBP19.41■□□□□ 0.7
CHMP3-202ENST00000393773 CSADQ9Y600 493 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 PTCH2Q9Y6C5 1203 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 AK9Q5TCS8 1911 aa19.41■□□□□ 0.7
CHMP3-202ENST00000393773 HDLBPQ00341 1268 aaKnown RBP19.4■□□□□ 0.7
CHMP3-202ENST00000393773 ZFYVE28Q9HCC9 887 aa19.4■□□□□ 0.7
CHMP3-202ENST00000393773 PTPRFP10586 1907 aa19.39■□□□□ 0.7
CHMP3-202ENST00000393773 CHAF1AQ13111 956 aaPredicted RBP19.39■□□□□ 0.69
CHMP3-202ENST00000393773 LRRC24Q50LG9 513 aa19.39■□□□□ 0.69
CHMP3-202ENST00000393773 TBC1D22AQ8WUA7 517 aa19.39■□□□□ 0.69
CHMP3-202ENST00000393773 TEKT1Q969V4 418 aa19.39■□□□□ 0.69
CHMP3-202ENST00000393773 SLC9C1Q4G0N8 1177 aa19.38■□□□□ 0.69
CHMP3-202ENST00000393773 ZDHHC15Q96MV8 337 aa19.38■□□□□ 0.69
CHMP3-202ENST00000393773 KIF16BQ96L93 1317 aa19.37■□□□□ 0.69
CHMP3-202ENST00000393773 METTL24Q5JXM2 366 aa19.37■□□□□ 0.69
CHMP3-202ENST00000393773 FAM83AQ86UY5 434 aa19.37■□□□□ 0.69
CHMP3-202ENST00000393773 VPS37DQ86XT2 251 aa19.37■□□□□ 0.69
CHMP3-202ENST00000393773 WRNIP1Q96S55 665 aa19.37■□□□□ 0.69
CHMP3-202ENST00000393773 ARHGAP39Q9C0H5 1083 aa19.37■□□□□ 0.69
CHMP3-202ENST00000393773 ZCCHC17Q9NP64 241 aaKnown RBP19.37■□□□□ 0.69
CHMP3-202ENST00000393773 ZNF521Q96K83 1311 aa19.36■□□□□ 0.69
CHMP3-202ENST00000393773 MYH2Q9UKX2 1941 aa19.36■□□□□ 0.69
CHMP3-202ENST00000393773 TLR2O60603 784 aa19.36■□□□□ 0.69
CHMP3-202ENST00000393773 PDE8BO95263 885 aa19.36■□□□□ 0.69
CHMP3-202ENST00000393773 FKBP1CQ5VVH2 108 aa19.36■□□□□ 0.69
CHMP3-202ENST00000393773 APOBEC3HQ6NTF7 200 aaKnown RBP19.36■□□□□ 0.69
CHMP3-202ENST00000393773 ERO1BQ86YB8 467 aa19.36■□□□□ 0.69
CHMP3-202ENST00000393773 PHIPQ8WWQ0 1821 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 MAST3O60307 1309 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 BTBD19C9JJ37 291 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 IRF6O14896 467 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 CETPP11597 493 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 ARHGEF6Q15052 776 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 CAVIN4Q5BKX8 364 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 KLHDC4Q8TBB5 520 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 ZKSCAN4Q969J2 545 aaPredicted RBP19.35■□□□□ 0.69
CHMP3-202ENST00000393773 RANBP2P49792 3224 aaKnown RBP19.35■□□□□ 0.69
CHMP3-202ENST00000393773 TRIOBPQ9H2D6 2365 aa19.35■□□□□ 0.69
CHMP3-202ENST00000393773 FGFR2P21802 821 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 BCAMP50895 628 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 LACTBP83111 547 aaPredicted RBP19.34■□□□□ 0.69
CHMP3-202ENST00000393773 PPIL2Q13356 520 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 TMEM106CQ9BVX2 250 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 MRIQ9BWK5 157 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 TMOD2Q9NZR1 351 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 SUGT1Q9Y2Z0 365 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 DOCK1Q14185 1865 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 SZT2Q5T011 3432 aa19.34■□□□□ 0.69
CHMP3-202ENST00000393773 ADGRA2Q96PE1 1338 aa19.33■□□□□ 0.69
CHMP3-202ENST00000393773 FRAT2O75474 233 aaPredicted RBP19.33■□□□□ 0.68
CHMP3-202ENST00000393773 FXR1P51114 621 aaKnown RBP eCLIP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms