RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 FOXP2O15409 715 aa32.06■■■□□ 2.72
MSX1-201ENST00000382723 CD2BP2O95400 341 aaKnown RBP32.06■■■□□ 2.72
MSX1-201ENST00000382723 LDHBP07195 334 aaKnown RBP32.06■■■□□ 2.72
MSX1-201ENST00000382723 CCDC93Q567U6 631 aa32.06■■■□□ 2.72
MSX1-201ENST00000382723 FBXW7Q969H0 707 aa32.06■■■□□ 2.72
MSX1-201ENST00000382723 STRBPQ96SI9 672 aaKnown RBP32.06■■■□□ 2.72
MSX1-201ENST00000382723 DZIP1Q86YF9 867 aaKnown RBP32.06■■■□□ 2.72
MSX1-201ENST00000382723 HSCBQ8IWL3 235 aa32.06■■■□□ 2.72
MSX1-201ENST00000382723 SNED1Q8TER0 1413 aa32.05■■■□□ 2.72
MSX1-201ENST00000382723 GTF2IP78347 998 aa32.05■■■□□ 2.72
MSX1-201ENST00000382723 GRIK5Q16478 980 aa32.05■■■□□ 2.72
MSX1-201ENST00000382723 UPF3BQ9BZI7 483 aaKnown RBP32.05■■■□□ 2.72
MSX1-201ENST00000382723 DBNDD1Q9H9R9 158 aa32.05■■■□□ 2.72
MSX1-201ENST00000382723 CD2APQ9Y5K6 639 aa32.05■■■□□ 2.72
MSX1-201ENST00000382723 NEK4P51957 841 aa32.04■■■□□ 2.72
MSX1-201ENST00000382723 LCORLQ8N3X6 602 aa32.04■■■□□ 2.72
MSX1-201ENST00000382723 SNX21Q969T3 373 aa32.04■■■□□ 2.72
MSX1-201ENST00000382723 TAF6LQ9Y6J9 622 aa32.04■■■□□ 2.72
MSX1-201ENST00000382723 APPP05067 770 aa32.04■■■□□ 2.72
MSX1-201ENST00000382723 AOC3Q16853 763 aa32.03■■■□□ 2.72
MSX1-201ENST00000382723 ADCK5Q3MIX3 580 aa32.03■■■□□ 2.72
MSX1-201ENST00000382723 DALRD3Q5D0E6 543 aaKnown RBP32.03■■■□□ 2.72
MSX1-201ENST00000382723 MFSD14BQ5SR56 506 aa32.03■■■□□ 2.72
MSX1-201ENST00000382723 RTKN2Q8IZC4 609 aa32.03■■■□□ 2.72
MSX1-201ENST00000382723 SUPT20HQ8NEM7 779 aa32.03■■■□□ 2.72
MSX1-201ENST00000382723 KIAA1551Q9HCM1 1747 aa32.03■■■□□ 2.72
MSX1-201ENST00000382723 MAGEB6P1A0A0J9YX57 407 aa32.02■■■□□ 2.72
MSX1-201ENST00000382723 TTLL5Q6EMB2 1281 aa32.02■■■□□ 2.72
MSX1-201ENST00000382723 JAKMIP1Q96N16 626 aaKnown RBP32.02■■■□□ 2.72
MSX1-201ENST00000382723 ST18O60284 1047 aa32.02■■■□□ 2.72
MSX1-201ENST00000382723 CYP21A2P08686 494 aa32.02■■■□□ 2.72
MSX1-201ENST00000382723 FAM205AQ6ZU69 1335 aa32.01■■■□□ 2.72
MSX1-201ENST00000382723 FGAP02671 866 aa32.01■■■□□ 2.71
MSX1-201ENST00000382723 GRIPAP1Q4V328 841 aa32.01■■■□□ 2.71
MSX1-201ENST00000382723 CASTP20810 708 aaKnown RBP32■■■□□ 2.71
MSX1-201ENST00000382723 TBC1D22AQ8WUA7 517 aa32■■■□□ 2.71
MSX1-201ENST00000382723 SPON1Q9HCB6 807 aa32■■■□□ 2.71
MSX1-201ENST00000382723 DYNLL1P63167 89 aaKnown RBP32■■■□□ 2.71
MSX1-201ENST00000382723 CTNNA3Q9UI47 895 aa32■■■□□ 2.71
MSX1-201ENST00000382723 PRKAB2O43741 272 aa31.99■■■□□ 2.71
MSX1-201ENST00000382723 SLC4A4Q9Y6R1 1079 aa31.99■■■□□ 2.71
MSX1-201ENST00000382723 GOLGB1Q14789 3259 aaKnown RBP31.99■■■□□ 2.71
MSX1-201ENST00000382723 PPIP5K2O43314 1243 aa31.98■■■□□ 2.71
MSX1-201ENST00000382723 ECE2O60344 883 aa31.98■■■□□ 2.71
MSX1-201ENST00000382723 CPA1P15085 419 aa31.98■■■□□ 2.71
MSX1-201ENST00000382723 KIAA2012Q0VF49 1180 aa31.98■■■□□ 2.71
MSX1-201ENST00000382723 PODNQ7Z5L7 613 aa31.98■■■□□ 2.71
MSX1-201ENST00000382723 RIOK1Q9BRS2 568 aaKnown RBP31.98■■■□□ 2.71
MSX1-201ENST00000382723 KCNQ5Q9NR82 932 aa31.98■■■□□ 2.71
MSX1-201ENST00000382723 PATL2C9JE40 543 aaKnown RBP31.97■■■□□ 2.71
MSX1-201ENST00000382723 DIXDC1Q155Q3 683 aa31.97■■■□□ 2.71
MSX1-201ENST00000382723 TSGA10IPQ3SY00 556 aa31.97■■■□□ 2.71
MSX1-201ENST00000382723 SOGA3Q5TF21 947 aa31.97■■■□□ 2.71
MSX1-201ENST00000382723 GNAT2P19087 354 aa31.96■■■□□ 2.71
MSX1-201ENST00000382723 PSMD1Q99460 953 aa31.96■■■□□ 2.71
MSX1-201ENST00000382723 AATFQ9NY61 560 aaKnown RBP eCLIP31.96■■■□□ 2.71
MSX1-201ENST00000382723 HAND2P61296 217 aa31.96■■■□□ 2.71
MSX1-201ENST00000382723 GSTO1P78417 241 aa31.96■■■□□ 2.71
MSX1-201ENST00000382723 MXD3Q9BW11 206 aa31.96■■■□□ 2.71
MSX1-201ENST00000382723 TM6SF1Q9BZW5 370 aa31.96■■■□□ 2.71
MSX1-201ENST00000382723 GSG1L2A8MUP6 293 aa31.95■■■□□ 2.71
MSX1-201ENST00000382723 IMMTQ16891 758 aaKnown RBP31.95■■■□□ 2.71
MSX1-201ENST00000382723 TMED8Q6PL24 325 aaPredicted RBP31.95■■■□□ 2.71
MSX1-201ENST00000382723 NLGN2Q8NFZ4 835 aa31.95■■■□□ 2.71
MSX1-201ENST00000382723 EPB41L4AQ9HCS5 686 aaPredicted RBP31.95■■■□□ 2.71
MSX1-201ENST00000382723 ZNF277Q9NRM2 450 aaPredicted RBP31.95■■■□□ 2.71
MSX1-201ENST00000382723 MAST2Q6P0Q8 1798 aa31.95■■■□□ 2.7
MSX1-201ENST00000382723 PSMA5P28066 241 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 KRT32Q14532 448 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 IFNL3Q8IZI9 196 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 ZSWIM6Q9HCJ5 1215 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 BCS1LQ9Y276 419 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 K7ELQ4 463 aaPredicted RBP31.94■■■□□ 2.7
MSX1-201ENST00000382723 IGSF3O75054 1194 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 CYP46A1Q9Y6A2 500 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 CHD4Q14839 1912 aa31.94■■■□□ 2.7
MSX1-201ENST00000382723 RPAP1Q9BWH6 1393 aaPredicted RBP31.94■■■□□ 2.7
MSX1-201ENST00000382723 CERS5Q8N5B7 392 aa31.93■■■□□ 2.7
MSX1-201ENST00000382723 SPRYD3Q8NCJ5 442 aa31.93■■■□□ 2.7
MSX1-201ENST00000382723 SDR42E1Q8WUS8 393 aa31.93■■■□□ 2.7
MSX1-201ENST00000382723 COL9A3Q14050 684 aaPredicted RBP31.92■■■□□ 2.7
MSX1-201ENST00000382723 STOX1Q6ZVD7 989 aa31.92■■■□□ 2.7
MSX1-201ENST00000382723 NAPBQ9H115 298 aa31.92■■■□□ 2.7
MSX1-201ENST00000382723 F8W031 263 aaPredicted RBP31.92■■■□□ 2.7
MSX1-201ENST00000382723 ZNF213O14771 459 aa31.92■■■□□ 2.7
MSX1-201ENST00000382723 NOL8Q76FK4 1167 aaKnown RBP31.92■■■□□ 2.7
MSX1-201ENST00000382723 RUFY3Q7L099 469 aa31.92■■■□□ 2.7
MSX1-201ENST00000382723 NACAP1Q9BZK3 213 aa31.92■■■□□ 2.7
MSX1-201ENST00000382723 LDHCP07864 332 aa31.91■■■□□ 2.7
MSX1-201ENST00000382723 ALX1Q15699 326 aa31.91■■■□□ 2.7
MSX1-201ENST00000382723 CCDC88AQ3V6T2 1871 aa31.91■■■□□ 2.7
MSX1-201ENST00000382723 E7EWF7 191 aa31.9■■■□□ 2.7
MSX1-201ENST00000382723 TDO2P48775 406 aa31.9■■■□□ 2.7
MSX1-201ENST00000382723 BLOC1S2Q6QNY1 142 aa31.9■■■□□ 2.7
MSX1-201ENST00000382723 LARGE2Q8N3Y3 721 aa31.9■■■□□ 2.7
MSX1-201ENST00000382723 NEK1Q96PY6 1258 aa31.9■■■□□ 2.7
MSX1-201ENST00000382723 MROH7-TTC4A0A0A0MT08 1334 aa31.9■■■□□ 2.7
MSX1-201ENST00000382723 PDRG1Q9NUG6 133 aa31.9■■■□□ 2.7
MSX1-201ENST00000382723 TTC14Q96N46 770 aa31.89■■■□□ 2.7
MSX1-201ENST00000382723 STRIP1Q5VSL9 837 aa31.88■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms