RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 NSUN4Q96CB9 384 aaKnown RBP22.31■■□□□ 1.16
CLN3-204ENST00000357857 RTFDC1Q9BY42 306 aaPredicted RBP22.31■■□□□ 1.16
CLN3-204ENST00000357857 SNED1Q8TER0 1413 aa22.31■■□□□ 1.16
CLN3-204ENST00000357857 MECOMQ03112 1051 aa22.3■■□□□ 1.16
CLN3-204ENST00000357857 JAKMIP1Q96N16 626 aaKnown RBP22.3■■□□□ 1.16
CLN3-204ENST00000357857 SGIP1Q9BQI5 828 aa22.3■■□□□ 1.16
CLN3-204ENST00000357857 UPF3BQ9BZI7 483 aaKnown RBP22.3■■□□□ 1.16
CLN3-204ENST00000357857 TM6SF1Q9BZW5 370 aa22.3■■□□□ 1.16
CLN3-204ENST00000357857 CTNNA3Q9UI47 895 aa22.3■■□□□ 1.16
CLN3-204ENST00000357857 BRCA1P38398 1863 aaKnown RBP22.3■■□□□ 1.16
CLN3-204ENST00000357857 C21orf2O43822 256 aa22.29■■□□□ 1.16
CLN3-204ENST00000357857 ADCK5Q3MIX3 580 aa22.29■■□□□ 1.16
CLN3-204ENST00000357857 ADGRA1Q86SQ6 560 aa22.29■■□□□ 1.16
CLN3-204ENST00000357857 ZNF384Q8TF68 577 aa22.29■■□□□ 1.16
CLN3-204ENST00000357857 ARMT1Q9H993 441 aa22.29■■□□□ 1.16
CLN3-204ENST00000357857 K7ELQ4 463 aaPredicted RBP22.28■■□□□ 1.16
CLN3-204ENST00000357857 LDHBP07195 334 aaKnown RBP22.28■■□□□ 1.16
CLN3-204ENST00000357857 CYP21A2P08686 494 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 CASTP20810 708 aaKnown RBP22.28■■□□□ 1.16
CLN3-204ENST00000357857 PSMA5P28066 241 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 KRT32Q14532 448 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 GRIPAP1Q4V328 841 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 DZIP1Q86YF9 867 aaKnown RBP22.28■■□□□ 1.16
CLN3-204ENST00000357857 MIGA1Q8NAN2 632 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 FAM205AQ6ZU69 1335 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 LAMA4Q16363 1823 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 RPAP1Q9BWH6 1393 aaPredicted RBP22.28■■□□□ 1.16
CLN3-204ENST00000357857 MAGEB6P1A0A0J9YX57 407 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 G3V3G9 751 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 GNAT2P19087 354 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 DCAF8Q5TAQ9 597 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 LCORLQ8N3X6 602 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 TBC1D22AQ8WUA7 517 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 TAF6LQ9Y6J9 622 aa22.28■■□□□ 1.16
CLN3-204ENST00000357857 MYH2Q9UKX2 1941 aa22.27■■□□□ 1.16
CLN3-204ENST00000357857 FGAP02671 866 aa22.27■■□□□ 1.16
CLN3-204ENST00000357857 DOK7Q18PE1 504 aa22.27■■□□□ 1.16
CLN3-204ENST00000357857 CCDC93Q567U6 631 aa22.27■■□□□ 1.16
CLN3-204ENST00000357857 SUPT20HQ8NEM7 779 aa22.27■■□□□ 1.16
CLN3-204ENST00000357857 ZSWIM6Q9HCJ5 1215 aa22.27■■□□□ 1.16
CLN3-204ENST00000357857 APPP05067 770 aa22.26■■□□□ 1.15
CLN3-204ENST00000357857 PIM2Q9P1W9 311 aa22.26■■□□□ 1.15
CLN3-204ENST00000357857 PATL2C9JE40 543 aaKnown RBP22.26■■□□□ 1.15
CLN3-204ENST00000357857 PTGER2P43116 358 aa22.26■■□□□ 1.15
CLN3-204ENST00000357857 MCM2P49736 904 aa22.26■■□□□ 1.15
CLN3-204ENST00000357857 IMMTQ16891 758 aaKnown RBP22.26■■□□□ 1.15
CLN3-204ENST00000357857 TTLL5Q6EMB2 1281 aa22.26■■□□□ 1.15
CLN3-204ENST00000357857 CYP46A1Q9Y6A2 500 aa22.26■■□□□ 1.15
CLN3-204ENST00000357857 GTF2IP78347 998 aa22.25■■□□□ 1.15
CLN3-204ENST00000357857 GSTO1P78417 241 aa22.25■■□□□ 1.15
CLN3-204ENST00000357857 ALX1Q15699 326 aa22.25■■□□□ 1.15
CLN3-204ENST00000357857 MFSD14BQ5SR56 506 aa22.25■■□□□ 1.15
CLN3-204ENST00000357857 RTKN2Q8IZC4 609 aa22.25■■□□□ 1.15
CLN3-204ENST00000357857 RIOK1Q9BRS2 568 aaKnown RBP22.25■■□□□ 1.15
CLN3-204ENST00000357857 PPP1R1BQ9UD71 204 aaPredicted RBP22.25■■□□□ 1.15
CLN3-204ENST00000357857 CD2APQ9Y5K6 639 aa22.25■■□□□ 1.15
CLN3-204ENST00000357857 SLC4A4Q9Y6R1 1079 aa22.25■■□□□ 1.15
CLN3-204ENST00000357857 ZMYM6O95789 1325 aa22.24■■□□□ 1.15
CLN3-204ENST00000357857 GRIK5Q16478 980 aa22.24■■□□□ 1.15
CLN3-204ENST00000357857 RUFY3Q7L099 469 aa22.24■■□□□ 1.15
CLN3-204ENST00000357857 TTC14Q96N46 770 aa22.24■■□□□ 1.15
CLN3-204ENST00000357857 CPA1P15085 419 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 BLOC1S2Q6QNY1 142 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 PODNQ7Z5L7 613 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 KLHL34Q8N239 644 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 GSG1L2A8MUP6 293 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 PRKAB2O43741 272 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 DYNLL1P63167 89 aaKnown RBP22.23■■□□□ 1.15
CLN3-204ENST00000357857 SOGA3Q5TF21 947 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 IFNL3Q8IZI9 196 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 FBXW7Q969H0 707 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 NEK1Q96PY6 1258 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 DBNDD1Q9H9R9 158 aa22.23■■□□□ 1.15
CLN3-204ENST00000357857 EPB41L4AQ9HCS5 686 aaPredicted RBP22.23■■□□□ 1.15
CLN3-204ENST00000357857 LDHCP07864 332 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 KIAA2012Q0VF49 1180 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 DALRD3Q5D0E6 543 aaKnown RBP22.22■■□□□ 1.15
CLN3-204ENST00000357857 STOX1Q6ZVD7 989 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 PSMD1Q99460 953 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 NACAP1Q9BZK3 213 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 NAPBQ9H115 298 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 PDRG1Q9NUG6 133 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 SCN9AQ15858 1988 aa22.22■■□□□ 1.15
CLN3-204ENST00000357857 ZNF213O14771 459 aa22.21■■□□□ 1.15
CLN3-204ENST00000357857 HAND2P61296 217 aa22.21■■□□□ 1.15
CLN3-204ENST00000357857 AOC3Q16853 763 aa22.21■■□□□ 1.15
CLN3-204ENST00000357857 AATFQ9NY61 560 aaKnown RBP eCLIP22.21■■□□□ 1.15
CLN3-204ENST00000357857 ZNF646O15015 1829 aaPredicted RBP22.21■■□□□ 1.15
CLN3-204ENST00000357857 E7EWF7 191 aa22.2■■□□□ 1.14
CLN3-204ENST00000357857 ECE2O60344 883 aa22.2■■□□□ 1.14
CLN3-204ENST00000357857 RPS6KB1P23443 525 aa22.2■■□□□ 1.14
CLN3-204ENST00000357857 SPRYD3Q8NCJ5 442 aa22.2■■□□□ 1.14
CLN3-204ENST00000357857 SUGT1Q9Y2Z0 365 aa22.2■■□□□ 1.14
CLN3-204ENST00000357857 BAZ2AQ9UIF9 1905 aaKnown RBP22.2■■□□□ 1.14
CLN3-204ENST00000357857 PPIP5K2O43314 1243 aa22.2■■□□□ 1.14
CLN3-204ENST00000357857 AK2P54819 239 aa22.2■■□□□ 1.14
CLN3-204ENST00000357857 MROH7-TTC4A0A0A0MT08 1334 aa22.19■■□□□ 1.14
CLN3-204ENST00000357857 FER1L6Q2WGJ9 1857 aa22.19■■□□□ 1.14
CLN3-204ENST00000357857 HMGB1P09429 215 aaKnown RBP22.19■■□□□ 1.14
CLN3-204ENST00000357857 TDO2P48775 406 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms