RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 LETM2Q2VYF4 491 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 IQUBQ8NA54 791 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 STK32BQ9NY57 414 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 TNNQ9UQP3 1299 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 NUP160Q12769 1436 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 CTAGE9A4FU28 777 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 HIBADHP31937 336 aaKnown RBP20.34■□□□□ 0.85
COL18A1-202ENST00000355480 PICK1Q9NRD5 415 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 HELLSQ9NRZ9 838 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 FBF1Q8TES7 1133 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 PARP10Q53GL7 1025 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 TRPM2O94759 1503 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 ATP2C2O75185 946 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 DCAF17Q5H9S7 520 aaPredicted RBP20.34■□□□□ 0.85
COL18A1-202ENST00000355480 TYRO3Q06418 890 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 CCDC63Q8NA47 563 aa20.34■□□□□ 0.85
COL18A1-202ENST00000355480 NDC80O14777 642 aa20.33■□□□□ 0.85
COL18A1-202ENST00000355480 ATP6V0A2Q9Y487 856 aa20.33■□□□□ 0.85
COL18A1-202ENST00000355480 SYCP2Q9BX26 1530 aa20.33■□□□□ 0.85
COL18A1-202ENST00000355480 MAP3K19Q56UN5 1328 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 A0A1B0GUL7 405 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 VWA3AA6NCI4 1184 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 RPL13P26373 211 aaKnown RBP20.33■□□□□ 0.84
COL18A1-202ENST00000355480 ZNF174Q15697 407 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 SNX21Q969T3 373 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 PRIMPOLQ96LW4 560 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 CALCOCO1Q9P1Z2 691 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 SH3TC1Q8TE82 1336 aa20.33■□□□□ 0.84
COL18A1-202ENST00000355480 CHMLP26374 656 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 MXRA7P84157 204 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 PLBD2Q8NHP8 589 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 RAB3IL1Q8TBN0 382 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 TRERF1Q96PN7 1200 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 TMOD4Q9NZQ9 345 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 RAPGEF1Q13905 1077 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 CCDC65Q8IXS2 484 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 HARSP12081 509 aaKnown RBP20.32■□□□□ 0.84
COL18A1-202ENST00000355480 EIF6P56537 245 aaKnown RBP20.32■□□□□ 0.84
COL18A1-202ENST00000355480 PUM3Q15397 648 aaKnown RBP20.32■□□□□ 0.84
COL18A1-202ENST00000355480 SV2BQ7L1I2 683 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 FCHSD1Q86WN1 690 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.32■□□□□ 0.84
COL18A1-202ENST00000355480 CDCA7Q9BWT1 371 aaPredicted RBP20.32■□□□□ 0.84
COL18A1-202ENST00000355480 EYA2O00167 538 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 TIMM10P62072 90 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 MAPK8IP2Q13387 824 aaPredicted RBP20.32■□□□□ 0.84
COL18A1-202ENST00000355480 PRAG1Q86YV5 1406 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 YTHDC2Q9H6S0 1430 aaKnown RBP20.32■□□□□ 0.84
COL18A1-202ENST00000355480 GGA1Q9UJY5 639 aa20.32■□□□□ 0.84
COL18A1-202ENST00000355480 ZFYVE9O95405 1425 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 APBB1IPQ7Z5R6 666 aaPredicted RBP20.31■□□□□ 0.84
COL18A1-202ENST00000355480 NSRP1Q9H0G5 558 aaKnown RBP20.31■□□□□ 0.84
COL18A1-202ENST00000355480 ARFGAP3Q9NP61 516 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 GUCA1BQ9UMX6 200 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 B4E1Z4 1266 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 ZNF790Q6PG37 636 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 PUS7Q96PZ0 661 aaKnown RBP20.31■□□□□ 0.84
COL18A1-202ENST00000355480 CAPZA3Q96KX2 299 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 FRMD4BQ9Y2L6 1034 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 CHMP2AO43633 222 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 ARMT1Q9H993 441 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 ARHGEF10LQ9HCE6 1279 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 PLEKHM2Q8IWE5 1019 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 ZNF408Q9H9D4 720 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 WDR70Q9NW82 654 aa20.31■□□□□ 0.84
COL18A1-202ENST00000355480 ATP10BO94823 1461 aa20.3■□□□□ 0.84
COL18A1-202ENST00000355480 BIRC3Q13489 604 aa20.3■□□□□ 0.84
COL18A1-202ENST00000355480 NOLC1Q14978 699 aaKnown RBP eCLIP20.3■□□□□ 0.84
COL18A1-202ENST00000355480 FNBP1Q96RU3 617 aa20.3■□□□□ 0.84
COL18A1-202ENST00000355480 STMN4Q9H169 189 aaPredicted RBP20.3■□□□□ 0.84
COL18A1-202ENST00000355480 A0A1W2PP64 1363 aa20.3■□□□□ 0.84
COL18A1-202ENST00000355480 CCT6AP40227 531 aaKnown RBP20.3■□□□□ 0.84
COL18A1-202ENST00000355480 MCM6Q14566 821 aa20.3■□□□□ 0.84
COL18A1-202ENST00000355480 RAPGEF6Q8TEU7 1601 aa20.3■□□□□ 0.84
COL18A1-202ENST00000355480 RLBP1P12271 317 aa20.29■□□□□ 0.84
COL18A1-202ENST00000355480 NOD1Q9Y239 953 aa20.29■□□□□ 0.84
COL18A1-202ENST00000355480 PDE8AO60658 829 aa20.29■□□□□ 0.84
COL18A1-202ENST00000355480 METTL22Q9BUU2 404 aaPredicted RBP20.29■□□□□ 0.84
COL18A1-202ENST00000355480 LUC7L2Q9Y383 392 aaKnown RBP20.29■□□□□ 0.84
COL18A1-202ENST00000355480 CCDC129Q6ZRS4 1044 aa20.29■□□□□ 0.84
COL18A1-202ENST00000355480 CCDC117Q8IWD4 279 aaPredicted RBP20.29■□□□□ 0.84
COL18A1-202ENST00000355480 TXNDC16Q9P2K2 825 aa20.29■□□□□ 0.84
COL18A1-202ENST00000355480 KARSQ15046 597 aaKnown RBP20.28■□□□□ 0.84
COL18A1-202ENST00000355480 ZBTB40Q9NUA8 1239 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 IFNKQ9P0W0 207 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 KAT6BQ8WYB5 2073 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 TRAF5O00463 557 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 KRT5P13647 590 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 ZYXQ15942 572 aaKnown RBP20.28■□□□□ 0.84
COL18A1-202ENST00000355480 LZTFL1Q9NQ48 299 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 TNNI3KQ59H18 835 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 WDR44Q5JSH3 913 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 FPGT-TNNI3KV9GXZ4 949 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 CCDC169A6NNP5 214 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 OPA1O60313 960 aa20.28■□□□□ 0.84
COL18A1-202ENST00000355480 EPB41P11171 864 aaKnown RBP20.28■□□□□ 0.84
COL18A1-202ENST00000355480 PLCD1P51178 756 aa20.27■□□□□ 0.84
COL18A1-202ENST00000355480 XAGE2Q96GT9 111 aa20.27■□□□□ 0.84
COL18A1-202ENST00000355480 PPP1R9BQ96SB3 815 aa20.27■□□□□ 0.84
COL18A1-202ENST00000355480 MAST3O60307 1309 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms