RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 CDCA7LQ96GN5 454 aa18.16■□□□□ 0.5
PRPF40A-201ENST00000354363 PDE4DIPQ5VU43 2346 aa18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 TNRC18O15417 2968 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 ALDH1A1P00352 501 aa18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 INHBEP58166 350 aa18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 CHAF1AQ13111 956 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 CAVIN4Q5BKX8 364 aa18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 IFNL1Q8IU54 200 aa18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 HPS5Q9UPZ3 1129 aa18.15■□□□□ 0.5
PRPF40A-201ENST00000354363 FKTNO75072 461 aa18.14■□□□□ 0.49
PRPF40A-201ENST00000354363 TBC1D22AQ8WUA7 517 aa18.14■□□□□ 0.49
PRPF40A-201ENST00000354363 FRAT2O75474 233 aaPredicted RBP18.13■□□□□ 0.49
PRPF40A-201ENST00000354363 GJA5P36382 358 aa18.13■□□□□ 0.49
PRPF40A-201ENST00000354363 RFX5P48382 616 aaPredicted RBP18.13■□□□□ 0.49
PRPF40A-201ENST00000354363 BCAMP50895 628 aa18.13■□□□□ 0.49
PRPF40A-201ENST00000354363 ANKRD13AQ8IZ07 590 aa18.13■□□□□ 0.49
PRPF40A-201ENST00000354363 TEPSINQ96N21 525 aa18.13■□□□□ 0.49
PRPF40A-201ENST00000354363 SMC4Q9NTJ3 1288 aa18.13■□□□□ 0.49
PRPF40A-201ENST00000354363 TCP10L2B9ZVM9 353 aa18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 IGF2BP3O00425 579 aaKnown RBP eCLIP18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 FGFR2P21802 821 aa18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 HDLBPQ00341 1268 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 CDAN1Q8IWY9 1227 aa18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 TRMT2AQ8IZ69 625 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 PUM3Q15397 648 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 TMEM39BQ9GZU3 492 aa18.12■□□□□ 0.49
PRPF40A-201ENST00000354363 KIF16BQ96L93 1317 aa18.11■□□□□ 0.49
PRPF40A-201ENST00000354363 EYA2O00167 538 aa18.11■□□□□ 0.49
PRPF40A-201ENST00000354363 IFIT1P09914 478 aaKnown RBP18.11■□□□□ 0.49
PRPF40A-201ENST00000354363 TNNI2P48788 182 aa18.1■□□□□ 0.49
PRPF40A-201ENST00000354363 FBXO46Q6PJ61 603 aaPredicted RBP18.1■□□□□ 0.49
PRPF40A-201ENST00000354363 TEKT1Q969V4 418 aa18.1■□□□□ 0.49
PRPF40A-201ENST00000354363 ELP3Q9H9T3 547 aa18.1■□□□□ 0.49
PRPF40A-201ENST00000354363 AK9Q5TCS8 1911 aa18.1■□□□□ 0.49
PRPF40A-201ENST00000354363 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 MRIQ9BWK5 157 aa18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 TESPA1A2RU30 521 aaPredicted RBP18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 SLC5A1P13866 664 aa18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 ATG9AQ7Z3C6 839 aa18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 OPTNQ96CV9 577 aa18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 ZDHHC15Q96MV8 337 aa18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 SUGT1Q9Y2Z0 365 aa18.09■□□□□ 0.49
PRPF40A-201ENST00000354363 CT47B1P0C2W7 299 aaPredicted RBP18.08■□□□□ 0.48
PRPF40A-201ENST00000354363 CACNB3P54284 484 aa18.08■□□□□ 0.48
PRPF40A-201ENST00000354363 LPIN2Q92539 896 aa18.08■□□□□ 0.48
PRPF40A-201ENST00000354363 PTPN18Q99952 460 aa18.08■□□□□ 0.48
PRPF40A-201ENST00000354363 NOB1Q9ULX3 412 aaKnown RBP18.08■□□□□ 0.48
PRPF40A-201ENST00000354363 MAST3O60307 1309 aa18.07■□□□□ 0.48
PRPF40A-201ENST00000354363 UBTFL1P0CB47 393 aaPredicted RBP18.07■□□□□ 0.48
PRPF40A-201ENST00000354363 MAP3K9P80192 1104 aa18.07■□□□□ 0.48
PRPF40A-201ENST00000354363 OTUD7BQ6GQQ9 843 aa18.07■□□□□ 0.48
PRPF40A-201ENST00000354363 APOBEC3HQ6NTF7 200 aaKnown RBP18.07■□□□□ 0.48
PRPF40A-201ENST00000354363 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.07■□□□□ 0.48
PRPF40A-201ENST00000354363 MS4A4AQ96JQ5 239 aa18.07■□□□□ 0.48
PRPF40A-201ENST00000354363 CRHR2Q13324 411 aa18.06■□□□□ 0.48
PRPF40A-201ENST00000354363 VGLL4Q14135 290 aa18.06■□□□□ 0.48
PRPF40A-201ENST00000354363 HHIPL2Q6UWX4 724 aa18.06■□□□□ 0.48
PRPF40A-201ENST00000354363 CNKSR2Q8WXI2 1034 aa18.06■□□□□ 0.48
PRPF40A-201ENST00000354363 TMOD2Q9NZR1 351 aa18.06■□□□□ 0.48
PRPF40A-201ENST00000354363 FBXO3Q9UK99 471 aa18.06■□□□□ 0.48
PRPF40A-201ENST00000354363 WDR66Q8TBY9 1149 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 SIL1Q9H173 461 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 TRIM17Q9Y577 477 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 MYH2Q9UKX2 1941 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 CIAO1O76071 339 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 FKBP1CQ5VVH2 108 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 OTOP1Q7RTM1 612 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 FAM83AQ86UY5 434 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 API5Q9BZZ5 524 aaKnown RBP18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 CSADQ9Y600 493 aa18.05■□□□□ 0.48
PRPF40A-201ENST00000354363 BRI3BPQ8WY22 251 aa18.04■□□□□ 0.48
PRPF40A-201ENST00000354363 ERO1AQ96HE7 468 aa18.04■□□□□ 0.48
PRPF40A-201ENST00000354363 CEP126Q9P2H0 1117 aa18.04■□□□□ 0.48
PRPF40A-201ENST00000354363 LRRFIP2Q9Y608 721 aaKnown RBP18.04■□□□□ 0.48
PRPF40A-201ENST00000354363 HTTP42858 3142 aa18.04■□□□□ 0.48
PRPF40A-201ENST00000354363 ATP2B3Q16720 1220 aa18.03■□□□□ 0.48
PRPF40A-201ENST00000354363 CD99L2Q8TCZ2 262 aa18.03■□□□□ 0.48
PRPF40A-201ENST00000354363 RPAP1Q9BWH6 1393 aaPredicted RBP18.03■□□□□ 0.48
PRPF40A-201ENST00000354363 CCL15-CCL14A0A0B4J2E2 113 aa18.02■□□□□ 0.48
PRPF40A-201ENST00000354363 GTF2A2P52657 109 aa18.02■□□□□ 0.48
PRPF40A-201ENST00000354363 CCL15Q16663 113 aa18.02■□□□□ 0.48
PRPF40A-201ENST00000354363 OTUD5Q96G74 571 aa18.02■□□□□ 0.48
PRPF40A-201ENST00000354363 PA2G4Q9UQ80 394 aaKnown RBP18.02■□□□□ 0.48
PRPF40A-201ENST00000354363 SNCAIPQ9Y6H5 919 aa18.02■□□□□ 0.48
PRPF40A-201ENST00000354363 KIAA0100Q14667 2235 aaKnown RBP18.02■□□□□ 0.47
PRPF40A-201ENST00000354363 SPDYE5A6NIY4 337 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 CCER2I3L3R5 266 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 RARSP54136 660 aaKnown RBP18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 SP3Q02447 781 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 WRNIP1Q96S55 665 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 MEIS3Q99687 375 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 HDAC5Q9UQL6 1122 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 DAGLAQ9Y4D2 1042 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 RBBP6Q7Z6E9 1792 aaKnown RBP18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 PRDX5P30044 214 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 IL15P40933 162 aaPredicted RBP18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 DIXDC1Q155Q3 683 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 HOOK2Q96ED9 719 aa18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 GNL3LQ9NVN8 582 aaKnown RBP18.01■□□□□ 0.47
PRPF40A-201ENST00000354363 CAP1Q01518 475 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms