RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 DCCP43146 1447 aa25.91■■□□□ 1.74
TRIM28-202ENST00000341753 M0R2C6 588 aa25.91■■□□□ 1.74
TRIM28-202ENST00000341753 SEC31AO94979 1220 aaKnown RBP25.91■■□□□ 1.74
TRIM28-202ENST00000341753 PLBD2Q8NHP8 589 aa25.91■■□□□ 1.74
TRIM28-202ENST00000341753 POLR3GO15318 223 aaPredicted RBP25.9■■□□□ 1.74
TRIM28-202ENST00000341753 URI1O94763 535 aaPredicted RBP25.9■■□□□ 1.74
TRIM28-202ENST00000341753 PFKFB1P16118 471 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 PLA2G4AP47712 749 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 CASP7P55210 303 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 HSP90AB3PQ58FF7 597 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 HELLSQ9NRZ9 838 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 ETF1P62495 437 aaKnown RBP25.9■■□□□ 1.74
TRIM28-202ENST00000341753 TPM4P67936 248 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 ZMYM1Q5SVZ6 1142 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 TMEM51Q9NW97 253 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 MROH7-TTC4A0A0A0MT08 1334 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 RFX7Q2KHR2 1363 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 ABCC6O95255 1503 aa25.9■■□□□ 1.74
TRIM28-202ENST00000341753 HSP90AA4PQ58FG1 418 aa25.89■■□□□ 1.74
TRIM28-202ENST00000341753 MYSM1Q5VVJ2 828 aa25.89■■□□□ 1.74
TRIM28-202ENST00000341753 KCNG4Q8TDN1 519 aa25.89■■□□□ 1.74
TRIM28-202ENST00000341753 UBXN4Q92575 508 aa25.89■■□□□ 1.74
TRIM28-202ENST00000341753 ZNF594Q96JF6 807 aaPredicted RBP25.89■■□□□ 1.74
TRIM28-202ENST00000341753 ORC3Q9UBD5 711 aaPredicted RBP25.89■■□□□ 1.74
TRIM28-202ENST00000341753 WDR17Q8IZU2 1322 aa25.89■■□□□ 1.73
TRIM28-202ENST00000341753 BPIFA3Q9BQP9 254 aa25.89■■□□□ 1.73
TRIM28-202ENST00000341753 UTP14AQ9BVJ6 771 aaKnown RBP25.89■■□□□ 1.73
TRIM28-202ENST00000341753 NRDCO43847 1150 aa25.88■■□□□ 1.73
TRIM28-202ENST00000341753 RABL6Q3YEC7 729 aaPredicted RBP25.88■■□□□ 1.73
TRIM28-202ENST00000341753 HSD3B7Q9H2F3 369 aa25.88■■□□□ 1.73
TRIM28-202ENST00000341753 AFDNP55196 1824 aaKnown RBP25.88■■□□□ 1.73
TRIM28-202ENST00000341753 CPDO75976 1380 aa25.88■■□□□ 1.73
TRIM28-202ENST00000341753 KLF18A0A0U1RQI7 1052 aa25.88■■□□□ 1.73
TRIM28-202ENST00000341753 GOLGA8BA8MQT2 603 aa25.88■■□□□ 1.73
TRIM28-202ENST00000341753 WDHD1O75717 1129 aaPredicted RBP25.88■■□□□ 1.73
TRIM28-202ENST00000341753 MNS1Q8NEH6 495 aa25.88■■□□□ 1.73
TRIM28-202ENST00000341753 CARD6Q9BX69 1037 aa25.88■■□□□ 1.73
TRIM28-202ENST00000341753 SERPINC1P01008 464 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 SYNE3Q6ZMZ3 975 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 TMEM232C9JQI7 657 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 TIGD1Q96MW7 591 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 CCDC85AQ96PX6 553 aaPredicted RBP25.87■■□□□ 1.73
TRIM28-202ENST00000341753 UBASH3AP57075 661 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 IRX5P78411 483 aaPredicted RBP25.87■■□□□ 1.73
TRIM28-202ENST00000341753 FOXO4P98177 505 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 CFAP100Q494V2 611 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 AIFM3Q96NN9 605 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 POLR3EQ9NVU0 708 aa25.87■■□□□ 1.73
TRIM28-202ENST00000341753 ZNF335Q9H4Z2 1342 aaPredicted RBP25.86■■□□□ 1.73
TRIM28-202ENST00000341753 GTF2E1P29083 439 aaPredicted RBP25.86■■□□□ 1.73
TRIM28-202ENST00000341753 AXDND1Q5T1B0 1012 aaPredicted RBP25.86■■□□□ 1.73
TRIM28-202ENST00000341753 TRIM65Q6PJ69 517 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 FBXO18Q8NFZ0 1043 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 OSBP2Q969R2 916 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 PALLDQ8WX93 1383 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 PCDH11XQ9BZA7 1347 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 PCDH11YQ9BZA8 1340 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 TMCO3Q6UWJ1 677 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 ATG9AQ7Z3C6 839 aa25.86■■□□□ 1.73
TRIM28-202ENST00000341753 YEATS4O95619 227 aa25.85■■□□□ 1.73
TRIM28-202ENST00000341753 IFIT1P09914 478 aaKnown RBP25.85■■□□□ 1.73
TRIM28-202ENST00000341753 GLI3P10071 1580 aa25.85■■□□□ 1.73
TRIM28-202ENST00000341753 FKBP4Q02790 459 aaKnown RBP eCLIP25.85■■□□□ 1.73
TRIM28-202ENST00000341753 ANO1Q5XXA6 986 aa25.85■■□□□ 1.73
TRIM28-202ENST00000341753 ARFGEF2Q9Y6D5 1785 aa25.85■■□□□ 1.73
TRIM28-202ENST00000341753 PKD1L3Q7Z443 1732 aa25.85■■□□□ 1.73
TRIM28-202ENST00000341753 LRRC24Q50LG9 513 aa25.85■■□□□ 1.73
TRIM28-202ENST00000341753 SLAIN2Q9P270 581 aa25.85■■□□□ 1.73
TRIM28-202ENST00000341753 RNF113AO15541 343 aaKnown RBP25.84■■□□□ 1.73
TRIM28-202ENST00000341753 PNOCQ13519 176 aa25.84■■□□□ 1.73
TRIM28-202ENST00000341753 CPLX1O14810 134 aa25.84■■□□□ 1.73
TRIM28-202ENST00000341753 PRC1O43663 620 aa25.84■■□□□ 1.73
TRIM28-202ENST00000341753 CYP2C19P33261 490 aa25.84■■□□□ 1.73
TRIM28-202ENST00000341753 HPS5Q9UPZ3 1129 aa25.84■■□□□ 1.73
TRIM28-202ENST00000341753 WASHC4Q2M389 1173 aa25.83■■□□□ 1.73
TRIM28-202ENST00000341753 ZRANB2O95218 330 aaKnown RBP eCLIP25.82■■□□□ 1.724e-7■■□□□ 13.4
TRIM28-202ENST00000341753 IL2RBP14784 551 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 ZCCHC17Q9NP64 241 aaKnown RBP25.82■■□□□ 1.72
TRIM28-202ENST00000341753 PHLPP2Q6ZVD8 1323 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 VGLL3A8MV65 326 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 H7C1W4 665 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 SYKP43405 635 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 EVA1CP58658 441 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 KIF23Q02241 960 aaPredicted RBP25.82■■□□□ 1.72
TRIM28-202ENST00000341753 MAPK8IP2Q13387 824 aaPredicted RBP25.82■■□□□ 1.72
TRIM28-202ENST00000341753 REXO1L1PQ8IX06 675 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 NEK11Q8NG66 645 aa25.82■■□□□ 1.72
TRIM28-202ENST00000341753 CWC25Q9NXE8 425 aaPredicted RBP25.82■■□□□ 1.72
TRIM28-202ENST00000341753 TADA3O75528 432 aa25.81■■□□□ 1.72
TRIM28-202ENST00000341753 RXRAP19793 462 aa25.81■■□□□ 1.72
TRIM28-202ENST00000341753 KCNJ6P48051 423 aa25.81■■□□□ 1.72
TRIM28-202ENST00000341753 HNRNPH2P55795 449 aaKnown RBP25.81■■□□□ 1.72
TRIM28-202ENST00000341753 ZBTB9Q96C00 473 aa25.81■■□□□ 1.72
TRIM28-202ENST00000341753 PUS3Q9BZE2 481 aaKnown RBP25.81■■□□□ 1.72
TRIM28-202ENST00000341753 CMA1P23946 247 aa25.81■■□□□ 1.72
TRIM28-202ENST00000341753 CLIC6Q96NY7 704 aa25.81■■□□□ 1.72
TRIM28-202ENST00000341753 ARGLU1Q9NWB6 273 aaPredicted RBP25.81■■□□□ 1.72
TRIM28-202ENST00000341753 PARP3Q9Y6F1 533 aa25.81■■□□□ 1.72
TRIM28-202ENST00000341753 EVCP57679 992 aa25.8■■□□□ 1.72
TRIM28-202ENST00000341753 XIRP1Q702N8 1843 aaKnown RBP25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms