RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ISCA1Q9BUE6 129 aa25.55■■□□□ 1.68
SHMT1-201ENST00000316694 UBR2Q8IWV8 1755 aa25.55■■□□□ 1.68
SHMT1-201ENST00000316694 BRAPQ7Z569 592 aa25.55■■□□□ 1.68
SHMT1-201ENST00000316694 SMC2O95347 1197 aa25.54■■□□□ 1.68
SHMT1-201ENST00000316694 ZSCAN20P17040 1043 aaPredicted RBP25.54■■□□□ 1.68
SHMT1-201ENST00000316694 TCIRG1Q13488 830 aa25.54■■□□□ 1.68
SHMT1-201ENST00000316694 SYCP1Q15431 976 aa25.54■■□□□ 1.68
SHMT1-201ENST00000316694 NBPF11Q86T75 865 aa25.54■■□□□ 1.68
SHMT1-201ENST00000316694 SLC3A2P08195 630 aaKnown RBP25.54■■□□□ 1.68
SHMT1-201ENST00000316694 NKX1-1Q15270 411 aaPredicted RBP25.54■■□□□ 1.68
SHMT1-201ENST00000316694 ZNF202O95125 648 aa25.53■■□□□ 1.68
SHMT1-201ENST00000316694 NYAP1Q6ZVC0 841 aa25.53■■□□□ 1.68
SHMT1-201ENST00000316694 COL5A2P05997 1499 aaPredicted RBP25.53■■□□□ 1.68
SHMT1-201ENST00000316694 IFIT5Q13325 482 aaKnown RBP25.53■■□□□ 1.68
SHMT1-201ENST00000316694 GSDMDP57764 484 aa25.52■■□□□ 1.68
SHMT1-201ENST00000316694 ANO1Q5XXA6 986 aa25.52■■□□□ 1.68
SHMT1-201ENST00000316694 CCAR2Q8N163 923 aaKnown RBP25.52■■□□□ 1.68
SHMT1-201ENST00000316694 NEDD4P46934 1319 aa25.52■■□□□ 1.68
SHMT1-201ENST00000316694 KIF23Q02241 960 aaPredicted RBP25.52■■□□□ 1.68
SHMT1-201ENST00000316694 XPO4Q9C0E2 1151 aaKnown RBP25.52■■□□□ 1.68
SHMT1-201ENST00000316694 IFNKQ9P0W0 207 aa25.52■■□□□ 1.68
SHMT1-201ENST00000316694 DENND2AQ9ULE3 1009 aa25.52■■□□□ 1.68
SHMT1-201ENST00000316694 MARCKSP29966 332 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-201ENST00000316694 PFKFB1P16118 471 aa25.51■■□□□ 1.67
SHMT1-201ENST00000316694 AIFM3Q96NN9 605 aa25.51■■□□□ 1.67
SHMT1-201ENST00000316694 DMTNQ08495 405 aa25.5■■□□□ 1.67
SHMT1-201ENST00000316694 TRDNQ13061 729 aa25.5■■□□□ 1.67
SHMT1-201ENST00000316694 METTL24Q5JXM2 366 aa25.5■■□□□ 1.67
SHMT1-201ENST00000316694 ISM2Q6H9L7 571 aa25.5■■□□□ 1.67
SHMT1-201ENST00000316694 TMC6Q7Z403 805 aa25.5■■□□□ 1.67
SHMT1-201ENST00000316694 FBXO3Q9UK99 471 aa25.5■■□□□ 1.67
SHMT1-201ENST00000316694 XIRP1Q702N8 1843 aaKnown RBP25.5■■□□□ 1.67
SHMT1-201ENST00000316694 RXRAP19793 462 aa25.49■■□□□ 1.67
SHMT1-201ENST00000316694 SYNE4Q8N205 404 aa25.49■■□□□ 1.67
SHMT1-201ENST00000316694 CARD10Q9BWT7 1032 aa25.49■■□□□ 1.67
SHMT1-201ENST00000316694 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.49■■□□□ 1.67
SHMT1-201ENST00000316694 MCAMP43121 646 aa25.49■■□□□ 1.67
SHMT1-201ENST00000316694 BPIFA3Q9BQP9 254 aa25.49■■□□□ 1.67
SHMT1-201ENST00000316694 OSBPL5Q9H0X9 879 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-201ENST00000316694 MROH7-TTC4A0A0A0MT08 1334 aa25.48■■□□□ 1.67
SHMT1-201ENST00000316694 APPP05067 770 aa25.48■■□□□ 1.67
SHMT1-201ENST00000316694 AXDND1Q5T1B0 1012 aaPredicted RBP25.48■■□□□ 1.67
SHMT1-201ENST00000316694 IMPACTQ9P2X3 320 aa25.48■■□□□ 1.67
SHMT1-201ENST00000316694 EVA1CP58658 441 aa25.48■■□□□ 1.67
SHMT1-201ENST00000316694 NLRP12P59046 1061 aa25.48■■□□□ 1.67
SHMT1-201ENST00000316694 KIF6Q6ZMV9 814 aa25.48■■□□□ 1.67
SHMT1-201ENST00000316694 NBPF3Q9H094 633 aa25.48■■□□□ 1.67
SHMT1-201ENST00000316694 CGNQ9P2M7 1197 aaKnown RBP25.48■■□□□ 1.67
SHMT1-201ENST00000316694 NOL12Q9UGY1 213 aaKnown RBP eCLIP25.48■■□□□ 1.67
SHMT1-201ENST00000316694 ZNF215Q9UL58 517 aaPredicted RBP25.48■■□□□ 1.67
SHMT1-201ENST00000316694 V9GYY5 206 aaPredicted RBP25.48■■□□□ 1.67
SHMT1-201ENST00000316694 WDHD1O75717 1129 aaPredicted RBP25.47■■□□□ 1.67
SHMT1-201ENST00000316694 PCCAP05165 728 aaPredicted RBP25.47■■□□□ 1.67
SHMT1-201ENST00000316694 CMA1P23946 247 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 TPM4P67936 248 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 SLC9C2Q5TAH2 1124 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 LDHAL6AQ6ZMR3 332 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 NKX2-3Q8TAU0 364 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 FEZ1Q99689 392 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 ALG1Q9BT22 464 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 ASAP1Q9ULH1 1129 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 ANGEL1Q9UNK9 670 aaKnown RBP25.47■■□□□ 1.67
SHMT1-201ENST00000316694 MYH7P12883 1935 aa25.47■■□□□ 1.67
SHMT1-201ENST00000316694 METAP2P50579 478 aaKnown RBP eCLIP25.46■■□□□ 1.67
SHMT1-201ENST00000316694 TBC1D10CQ8IV04 446 aa25.46■■□□□ 1.67
SHMT1-201ENST00000316694 PAPPAQ13219 1627 aa25.46■■□□□ 1.67
SHMT1-201ENST00000316694 GNL2Q13823 731 aaKnown RBP25.46■■□□□ 1.67
SHMT1-201ENST00000316694 CYB5R4Q7L1T6 521 aa25.46■■□□□ 1.67
SHMT1-201ENST00000316694 ZBTB38Q8NAP3 1195 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-201ENST00000316694 KIF18AQ8NI77 898 aa25.46■■□□□ 1.67
SHMT1-201ENST00000316694 TMOD3Q9NYL9 352 aa25.46■■□□□ 1.67
SHMT1-201ENST00000316694 SLAIN2Q9P270 581 aa25.46■■□□□ 1.67
SHMT1-201ENST00000316694 SHANK3Q9BYB0 1731 aa25.46■■□□□ 1.67
SHMT1-201ENST00000316694 ZMYM6O95789 1325 aa25.45■■□□□ 1.67
SHMT1-201ENST00000316694 SOS2Q07890 1332 aaPredicted RBP25.45■■□□□ 1.67
SHMT1-201ENST00000316694 IDH1O75874 414 aaKnown RBP25.45■■□□□ 1.67
SHMT1-201ENST00000316694 CSF1RP07333 972 aa25.45■■□□□ 1.67
SHMT1-201ENST00000316694 GPTP24298 496 aa25.45■■□□□ 1.67
SHMT1-201ENST00000316694 LMOD1P29536 600 aaPredicted RBP25.45■■□□□ 1.67
SHMT1-201ENST00000316694 SLC39A14Q15043 492 aa25.45■■□□□ 1.67
SHMT1-201ENST00000316694 ARMCX5Q6P1M9 558 aa25.45■■□□□ 1.67
SHMT1-201ENST00000316694 DNAJC10Q8IXB1 793 aa25.45■■□□□ 1.67
SHMT1-201ENST00000316694 ZHX1Q9UKY1 873 aaPredicted RBP25.45■■□□□ 1.67
SHMT1-201ENST00000316694 TNS2Q63HR2 1409 aa25.45■■□□□ 1.67
SHMT1-201ENST00000316694 WDR19Q8NEZ3 1342 aa25.45■■□□□ 1.66
SHMT1-201ENST00000316694 VPS37DQ86XT2 251 aa25.45■■□□□ 1.66
SHMT1-201ENST00000316694 PHKBQ93100 1093 aa25.45■■□□□ 1.66
SHMT1-201ENST00000316694 RIC1Q4ADV7 1423 aa25.45■■□□□ 1.66
SHMT1-201ENST00000316694 SFPQP23246 707 aaKnown RBP eCLIP25.44■■□□□ 1.66
SHMT1-201ENST00000316694 ADD2P35612 726 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 MICU3Q86XE3 530 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 ABCC12Q96J65 1359 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 C4AP0C0L4 1744 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 C4BP0C0L5 1744 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 ITGA6P23229 1130 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 SYKP43405 635 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 TRIM28Q13263 835 aaKnown RBP25.44■■□□□ 1.66
SHMT1-201ENST00000316694 NCAPHQ15003 741 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 UTP14CQ5TAP6 766 aaKnown RBP25.44■■□□□ 1.66
SHMT1-201ENST00000316694 CCDC150Q8NCX0 1101 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms