RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 FERP16591 822 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 PARD3Q8TEW0 1356 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 SH3TC1Q8TE82 1336 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 ARL1P40616 181 aaPredicted RBP19.56■□□□□ 0.72
SHANK1-201ENST00000293441 BICDL2A1A5D9 508 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 H0YIN7 160 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 A1BGP04217 495 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 UBXN1Q04323 297 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 CCDC50Q8IVM0 306 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 HSF2BPO75031 334 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 ZNF174Q15697 407 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 TAF12Q16514 161 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 TAF5LO75529 589 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 CKAP4Q07065 602 aaKnown RBP19.55■□□□□ 0.72
SHANK1-201ENST00000293441 TBX22Q9Y458 520 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 FCHSD1Q86WN1 690 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 BBXQ8WY36 941 aaPredicted RBP19.55■□□□□ 0.72
SHANK1-201ENST00000293441 CHMP2AO43633 222 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 NEK11Q8NG66 645 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 ARHGEF10LQ9HCE6 1279 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 DPP8Q6V1X1 898 aaPredicted RBP19.55■□□□□ 0.72
SHANK1-201ENST00000293441 KLHDC4Q8TBB5 520 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 CHMLP26374 656 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 PLEKHM2Q8IWE5 1019 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 XAGE2Q96GT9 111 aa19.55■□□□□ 0.72
SHANK1-201ENST00000293441 EYA2O00167 538 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 PEG3Q9GZU2 1588 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 HARSP12081 509 aaKnown RBP19.54■□□□□ 0.72
SHANK1-201ENST00000293441 TNNI3KQ59H18 835 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 DCAF17Q5H9S7 520 aaPredicted RBP19.54■□□□□ 0.72
SHANK1-201ENST00000293441 AATFQ9NY61 560 aaKnown RBP eCLIP19.54■□□□□ 0.72
SHANK1-201ENST00000293441 FPGT-TNNI3KV9GXZ4 949 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 VWA3AA6NCI4 1184 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 PRKG1Q13976 671 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 CCDC155Q8N6L0 562 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 CEP112Q8N8E3 955 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 LGR6Q9HBX8 967 aa19.54■□□□□ 0.72
SHANK1-201ENST00000293441 CFAP65Q6ZU64 1925 aaKnown RBP19.54■□□□□ 0.72
SHANK1-201ENST00000293441 SYT1P21579 422 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 PUS7Q96PZ0 661 aaKnown RBP19.53■□□□□ 0.72
SHANK1-201ENST00000293441 PAIP2Q9BPZ3 127 aaKnown RBP19.53■□□□□ 0.72
SHANK1-201ENST00000293441 WDR70Q9NW82 654 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 RASAL2Q9UJF2 1139 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 MICALCLQ6ZW33 695 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 LARGE2Q8N3Y3 721 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 SLC52A2Q9HAB3 445 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 USP21Q9UK80 565 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 SKILP12757 684 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 PRPHP41219 470 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 CCDC87Q9NVE4 849 aa19.53■□□□□ 0.72
SHANK1-201ENST00000293441 SBNO1A3KN83 1393 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 CEP83Q9Y592 693 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 ADAMTS12P58397 1594 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 TACC1O75410 805 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 BRAPQ7Z569 592 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 ZBTB40Q9NUA8 1239 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 FAM200AQ8TCP9 573 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 PRDM10Q9NQV6 1147 aa19.52■□□□□ 0.72
SHANK1-201ENST00000293441 CPA1P15085 419 aa19.52■□□□□ 0.71
SHANK1-201ENST00000293441 FAM107BQ9H098 131 aa19.52■□□□□ 0.71
SHANK1-201ENST00000293441 PLCB3Q01970 1234 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 RAD50Q92878 1312 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 CCNT1O60563 726 aaKnown RBP19.51■□□□□ 0.71
SHANK1-201ENST00000293441 DDX12PQ92771 950 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 CEP63Q96MT8 703 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 TCP10Q12799 353 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 CCDC186Q7Z3E2 898 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 DNAI1Q9UI46 699 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 APBA3O96018 575 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 CCT6AP40227 531 aaKnown RBP19.51■□□□□ 0.71
SHANK1-201ENST00000293441 SV2BQ7L1I2 683 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 CCDC65Q8IXS2 484 aa19.51■□□□□ 0.71
SHANK1-201ENST00000293441 NAP1L4Q99733 375 aaKnown RBP19.5■□□□□ 0.71
SHANK1-201ENST00000293441 DBNDD2Q9BQY9 259 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 IQCGQ9H095 443 aaKnown RBP19.5■□□□□ 0.71
SHANK1-201ENST00000293441 MAPKBP1O60336 1514 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 RAPGEF1Q13905 1077 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 LMBR1Q8WVP7 490 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 SREK1Q8WXA9 508 aaKnown RBP19.5■□□□□ 0.71
SHANK1-201ENST00000293441 WDR62O43379 1518 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 MYCLP12524 364 aaPredicted RBP19.5■□□□□ 0.71
SHANK1-201ENST00000293441 PAXBP1Q9Y5B6 917 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 KRT5P13647 590 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 TESK2Q96S53 571 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 NOD1Q9Y239 953 aa19.5■□□□□ 0.71
SHANK1-201ENST00000293441 TYRO3Q06418 890 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 FRMD4BQ9Y2L6 1034 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 MAST3O60307 1309 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 EDC4Q6P2E9 1401 aaKnown RBP19.49■□□□□ 0.71
SHANK1-201ENST00000293441 CCDC169A6NNP5 214 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 IQUBQ8NA54 791 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 CTAGE15A4D2H0 777 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 CTAGE8P0CG41 777 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 CTAGE6Q86UF2 777 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 CTAGE4Q8IX94 777 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 CCDC42Q96M95 316 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 KIF5AQ12840 1032 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 MSANTD4Q8NCY6 345 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 WDR66Q8TBY9 1149 aa19.49■□□□□ 0.71
SHANK1-201ENST00000293441 SNX21Q969T3 373 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms