RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TIMM10P62072 90 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 LONRF3Q496Y0 759 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 SRLQ86TD4 932 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 TSPYL1Q9H0U9 437 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 HSD3B7Q9H2F3 369 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 CWC15Q9P013 229 aaKnown RBP16.54■□□□□ 0.24
SDC1-201ENST00000254351 U3KPZ7 1027 aaPredicted RBP16.54■□□□□ 0.24
SDC1-201ENST00000254351 STRCP1A6NGW2 1772 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 CARMIL3Q8ND23 1372 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 SYKP43405 635 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 SLC20A2Q08357 652 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 LMOD2Q6P5Q4 547 aa16.54■□□□□ 0.24
SDC1-201ENST00000254351 ZNF609O15014 1411 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 E7EWF7 191 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 ZSCAN12O43309 604 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 CDC27P30260 824 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 AKAP12Q02952 1782 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 MON2Q7Z3U7 1717 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 KLHL34Q8N239 644 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 SBNO1A3KN83 1393 aa16.53■□□□□ 0.24
SDC1-201ENST00000254351 SOWAHDA6NJG2 315 aa16.52■□□□□ 0.24
SDC1-201ENST00000254351 PDE4BQ07343 736 aa16.52■□□□□ 0.24
SDC1-201ENST00000254351 GRAMD1CQ8IYS0 662 aa16.52■□□□□ 0.24
SDC1-201ENST00000254351 GPR161Q8N6U8 529 aaKnown RBP16.52■□□□□ 0.24
SDC1-201ENST00000254351 GOLGA8BA8MQT2 603 aa16.52■□□□□ 0.24
SDC1-201ENST00000254351 UBE3BQ7Z3V4 1068 aa16.52■□□□□ 0.24
SDC1-201ENST00000254351 FBXO18Q8NFZ0 1043 aa16.52■□□□□ 0.24
SDC1-201ENST00000254351 MRPL44Q9H9J2 332 aaKnown RBP16.52■□□□□ 0.24
SDC1-201ENST00000254351 OVOS2A0A0J9YW53 1432 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 OVOS2Q6IE36 1432 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 LOC102724159A0A0B4J2E5 919 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 KLF18A0A0U1RQI7 1052 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 UBE2Q2LH0YL09 131 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 MYL5Q02045 173 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 PWP2Q15269 919 aaKnown RBP16.52■□□□□ 0.23
SDC1-201ENST00000254351 KLHL10Q6JEL2 608 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 RGS22Q8NE09 1264 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 GOLGA1Q92805 767 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 PNKPQ96T60 521 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 USP6P35125 1406 aa16.52■□□□□ 0.23
SDC1-201ENST00000254351 ACTN2P35609 894 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 FAM193AP78312 1265 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 MYSM1Q5VVJ2 828 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 CHMP4BP1P59074 171 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 FKBP4Q02790 459 aaKnown RBP eCLIP16.51■□□□□ 0.233e-7■■■□□ 19.2
SDC1-201ENST00000254351 TNNI3KQ59H18 835 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 OLFM4Q6UX06 510 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 CCDC82Q8N4S0 544 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 GOLGA5Q8TBA6 731 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 RTEL1Q9NZ71 1219 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 MRFAP1Q9Y605 127 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 FPGT-TNNI3KV9GXZ4 949 aa16.51■□□□□ 0.23
SDC1-201ENST00000254351 RGPD8O14715 1765 aaPredicted RBP16.51■□□□□ 0.23
SDC1-201ENST00000254351 MAP3K9P80192 1104 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 JAKMIP3Q5VZ66 844 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 PACS2Q86VP3 889 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 ABCB6Q9NP58 842 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 INTS13Q9NVM9 706 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 IGKV5-2P06315 115 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 WASHC4Q2M389 1173 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 VSTM4Q8IW00 320 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 CCDC85AQ96PX6 553 aaPredicted RBP16.5■□□□□ 0.23
SDC1-201ENST00000254351 SRRTQ9BXP5 876 aaKnown RBP16.5■□□□□ 0.23
SDC1-201ENST00000254351 DENND2AQ9ULE3 1009 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 TMEM94Q12767 1356 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 NEDD4P46934 1319 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 CCP110O43303 1012 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 ABL1P00519 1130 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 STX17P56962 302 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 KIF4BQ2VIQ3 1234 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 ANO1Q5XXA6 986 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 PHKBQ93100 1093 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 KDRP35968 1356 aa16.5■□□□□ 0.23
SDC1-201ENST00000254351 MUM1L1Q5H9M0 696 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 ZNF569Q5MCW4 686 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 USPL1Q5W0Q7 1092 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 KCNG4Q8TDN1 519 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 PCDHA5Q9Y5H7 936 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 TXLNAP40222 546 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 NOP2P46087 812 aaKnown RBP16.49■□□□□ 0.23
SDC1-201ENST00000254351 CNNM3Q8NE01 707 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 LINS1Q8NG48 757 aa16.49■□□□□ 0.23
SDC1-201ENST00000254351 ARHGAP6O43182 974 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 ZMYND10O75800 440 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 TPM1P09493 284 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 PPARDQ03181 441 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 TSGA10IPQ3SY00 556 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 FOXP4Q8IVH2 680 aaPredicted RBP16.48■□□□□ 0.23
SDC1-201ENST00000254351 LLPHQ9BRT6 129 aaKnown RBP16.48■□□□□ 0.23
SDC1-201ENST00000254351 C19orf44Q9H6X5 657 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 KCND1Q9NSA2 647 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 HSPD1P10809 573 aaKnown RBP16.48■□□□□ 0.23
SDC1-201ENST00000254351 SAMSN1Q9NSI8 373 aaKnown RBP16.48■□□□□ 0.23
SDC1-201ENST00000254351 NFE2L3Q9Y4A8 694 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 NRKQ7Z2Y5 1582 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 COPS6Q7L5N1 327 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 RIN2Q8WYP3 895 aaPredicted RBP16.48■□□□□ 0.23
SDC1-201ENST00000254351 CDC5LQ99459 802 aaKnown RBP16.48■□□□□ 0.23
SDC1-201ENST00000254351 MPHOSPH8Q99549 860 aa16.48■□□□□ 0.23
SDC1-201ENST00000254351 MYL10Q9BUA6 226 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms