RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Snx16Q8C080 344 aa10.11□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Cuedc1Q8R3V6 388 aa10.11□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Dnajc3Q91YW3 504 aa10.11□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Taf11Q99JX1 211 aa10.11□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Pcsk1nQ9QXV0 258 aa10.11□□□□□ -0.79
Clcn3-202ENSMUST00000056508 1700010I14RikQ7TPG0 532 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Tcp10aQ80W76 438 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Dbr1Q923B1 550 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 PalmdQ9JHU2 551 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Rabep1O35551 862 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Aldh3a2P47740 484 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Ptpn21Q62136 1176 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Klhl23Q6GQU2 558 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Samm50Q8BGH2 469 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Fkbp4P30416 458 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Gna15P30678 374 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Yy1Q00899 414 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Cep131Q62036 1060 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Nt5dc1Q8C5P5 467 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Fam13bQ8K2H3 851 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Fam76aQ922G2 307 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Smtnl1Q99LM3 459 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Tekt1Q9DAJ2 418 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Basp1Q91XV3 226 aa10.1□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Casp1P29452 402 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 S100a5P63084 93 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Dennd1bQ3U1T9 766 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Ankrd53Q3V0J4 497 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Pramel6Q810Y9 485 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Rasgrp4Q8BTM9 673 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Iqca1Q9CUL5 857 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Gm4871D3Z0W7 314 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Sclt1G5E861 688 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Slc44a2Q8BY89 706 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Herpud2Q9JJC9 404 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Sgk1Q9WVC6 431 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Hsd17b7O88736 334 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Nlrp10Q8CCN1 673 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Phldb2Q8K1N2 1249 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 ZwilchQ8R060 589 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Znf830Q8R1N0 363 aaKnown RBP10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Mcm8Q9CWV1 833 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Gfod2Q9CYH5 385 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Tmod3Q9JHJ0 352 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Atp6v1dP57746 247 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Hvcn1Q3U2S8 269 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Krt9Q6RHW0 743 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Nek5Q7TSC3 627 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Map3k11Q80XI6 850 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Epsti1Q8VDI1 314 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Maged2Q9ER67 616 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 DgkhD3YXJ0 1156 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Tcp10cE9Q046 482 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Six5P70178 719 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Hdac2P70288 488 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Atf4Q06507 349 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Cdkl5Q3UTQ8 938 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Ccdc160Q3UYG1 323 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Ccdc110Q3V125 848 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Atg7Q9D906 698 aa10.09□□□□□ -0.79
Clcn3-202ENSMUST00000056508 Apol7aB2RT54 418 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 UmpsP13439 481 aaKnown RBP10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 CntfP51642 198 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Zhx1P70121 873 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Taok1Q5F2E8 1001 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Flot2Q60634 428 aaKnown RBP10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Eif3j2Q66JS6 263 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Maml1Q6T264 1020 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Sh3tc2Q80VA5 1289 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Desi2Q9D291 194 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Gm3404Q9D506 307 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Diaph3Q9Z207 1171 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 FkbplO35450 347 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Nucb2P81117 420 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Dab2P98078 766 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Gbp10Q000W5 611 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 MyzapQ3UIJ9 466 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 MuskQ61006 868 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Cracr2bQ80ZJ8 394 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 KinQ8K339 391 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 SfpqQ8VIJ6 699 aaKnown RBP10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Cpa2Q504N0 417 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Nr1h4Q60641 488 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Arhgef2Q60875 985 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Sh3gl1Q62419 368 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Luc7l2Q7TNC4 392 aaKnown RBP10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Wdr48Q8BH57 676 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Dennd6aQ8BH65 605 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Zbtb9Q8CDC7 459 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Arf3P61205 181 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Arf1P84078 181 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Znf496Q5SXI5 585 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 P4ha1Q60715 534 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Npdc1Q64322 332 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Kctd2Q8CEZ0 266 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 LzicQ8K3C3 190 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 CenpkQ9ESN5 271 aa10.08□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Kcnb2A6H8H5 907 aa10.07□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Krt90E9Q1Z0 538 aa10.07□□□□□ -0.8
Clcn3-202ENSMUST00000056508 Psen1P49769 467 aa10.07□□□□□ -0.8
Retrieved 100 of 22,080 RNA–protein pairs in 26.4 ms