Protein–RNA interactions for Protein: Q9JJC9

Herpud2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, mousemouse

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Herpud2Q9JJC9 Gm25239-201ENSMUST00000174915 86 ntBASIC39.13■■■■□ 3.85
Herpud2Q9JJC9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
Herpud2Q9JJC9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
Herpud2Q9JJC9 Gm15042-201ENSMUST00000120212 883 ntBASIC34.21■■■■□ 3.07
Herpud2Q9JJC9 Gm24109-201ENSMUST00000175489 103 ntBASIC33.89■■■■□ 3.02
Herpud2Q9JJC9 Gm15045-201ENSMUST00000117359 883 ntBASIC33.4■■■□□ 2.94
Herpud2Q9JJC9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Herpud2Q9JJC9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Herpud2Q9JJC9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
Herpud2Q9JJC9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
Herpud2Q9JJC9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Herpud2Q9JJC9 Gm23366-201ENSMUST00000175022 89 ntBASIC32.74■■■□□ 2.83
Herpud2Q9JJC9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Herpud2Q9JJC9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.21■■■□□ 2.75
Herpud2Q9JJC9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Herpud2Q9JJC9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
Herpud2Q9JJC9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.6■■■□□ 2.65
Herpud2Q9JJC9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Herpud2Q9JJC9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Herpud2Q9JJC9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.46■■■□□ 2.63
Herpud2Q9JJC9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.38■■■□□ 2.61
Herpud2Q9JJC9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.32■■■□□ 2.6
Herpud2Q9JJC9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Herpud2Q9JJC9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Herpud2Q9JJC9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Herpud2Q9JJC9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Herpud2Q9JJC9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.55
Herpud2Q9JJC9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Herpud2Q9JJC9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
Herpud2Q9JJC9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC30.95■■■□□ 2.55
Herpud2Q9JJC9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Herpud2Q9JJC9 Gm25238-201ENSMUST00000174914 89 ntBASIC30.86■■■□□ 2.53
Herpud2Q9JJC9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.86■■■□□ 2.53
Herpud2Q9JJC9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Herpud2Q9JJC9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
Herpud2Q9JJC9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
Herpud2Q9JJC9 Psd-208ENSMUST00000224556 2034 ntBASIC30.47■■■□□ 2.47
Herpud2Q9JJC9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.37■■■□□ 2.45
Herpud2Q9JJC9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.28■■■□□ 2.44
Herpud2Q9JJC9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Herpud2Q9JJC9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.16■■■□□ 2.42
Herpud2Q9JJC9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Herpud2Q9JJC9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.02■■■□□ 2.4
Herpud2Q9JJC9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC29.97■■■□□ 2.39
Herpud2Q9JJC9 Gm27325-201ENSMUST00000175467 74 ntBASIC29.96■■■□□ 2.39
Herpud2Q9JJC9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
Herpud2Q9JJC9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Herpud2Q9JJC9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Herpud2Q9JJC9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC29.82■■■□□ 2.36
Herpud2Q9JJC9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.77■■■□□ 2.36
Herpud2Q9JJC9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Herpud2Q9JJC9 Gm25262-201ENSMUST00000174934 133 ntBASIC29.65■■■□□ 2.34
Herpud2Q9JJC9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Herpud2Q9JJC9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.51■■■□□ 2.31
Herpud2Q9JJC9 Rab21-202ENSMUST00000218831 843 ntBASIC29.47■■■□□ 2.31
Herpud2Q9JJC9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Herpud2Q9JJC9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.42■■■□□ 2.3
Herpud2Q9JJC9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Herpud2Q9JJC9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.38■■■□□ 2.29
Herpud2Q9JJC9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Herpud2Q9JJC9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Herpud2Q9JJC9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Herpud2Q9JJC9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
Herpud2Q9JJC9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.22■■■□□ 2.27
Herpud2Q9JJC9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.17■■■□□ 2.26
Herpud2Q9JJC9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Herpud2Q9JJC9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.07■■■□□ 2.24
Herpud2Q9JJC9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.07■■■□□ 2.24
Herpud2Q9JJC9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.03■■■□□ 2.24
Herpud2Q9JJC9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
Herpud2Q9JJC9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Herpud2Q9JJC9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.99■■■□□ 2.23
Herpud2Q9JJC9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
Herpud2Q9JJC9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC28.98■■■□□ 2.23
Herpud2Q9JJC9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC28.96■■■□□ 2.23
Herpud2Q9JJC9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
Herpud2Q9JJC9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Herpud2Q9JJC9 Gm26115-201ENSMUST00000175605 87 ntBASIC28.91■■■□□ 2.22
Herpud2Q9JJC9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Herpud2Q9JJC9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Herpud2Q9JJC9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Herpud2Q9JJC9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Herpud2Q9JJC9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
Herpud2Q9JJC9 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.8■■■□□ 2.2
Herpud2Q9JJC9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Herpud2Q9JJC9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Herpud2Q9JJC9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Herpud2Q9JJC9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Herpud2Q9JJC9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.71■■■□□ 2.19
Herpud2Q9JJC9 Gm8109-201ENSMUST00000194076 746 ntBASIC28.7■■■□□ 2.18
Herpud2Q9JJC9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Herpud2Q9JJC9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.69■■■□□ 2.18
Herpud2Q9JJC9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Herpud2Q9JJC9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.59■■■□□ 2.17
Herpud2Q9JJC9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC28.56■■■□□ 2.16
Herpud2Q9JJC9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.55■■■□□ 2.16
Herpud2Q9JJC9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Herpud2Q9JJC9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Herpud2Q9JJC9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Herpud2Q9JJC9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.49■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 181 ms