RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 OR8A1Q8NGG7 326 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OR51A2Q8NGJ7 313 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OR2K2Q8NGT1 345 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OR10A6Q8NH74 314 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SPPL2BQ8TCT7 592 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 GNPDA2Q8TDQ7 276 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SKA2Q8WVK7 121 aaPredicted RBP1.34□□□□□ -2.19
CD44-239ENST00000639002 LZICQ8WZA0 190 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 CPNE2Q96FN4 548 aaPredicted RBP1.34□□□□□ -2.19
CD44-239ENST00000639002 CNBD2Q96M20 576 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OLFM3Q96PB7 478 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OR2V2Q96R30 315 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TRIB3Q96RU7 358 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 PRSS27Q9BQR3 290 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 MED18Q9BUE0 208 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TMEM109Q9BVC6 243 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 COMMD5Q9GZQ3 224 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 CISHQ9NSE2 258 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TAS2R7Q9NYW3 318 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TAC3Q9UHF0 121 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 DNAJC12Q9UKB3 198 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 BTRCQ9Y297 605 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 KLF13Q9Y2Y9 288 aaPredicted RBP1.34□□□□□ -2.19
CD44-239ENST00000639002 WASHC3Q9Y3C0 194 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 HSPB11Q9Y547 144 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SLC22A7Q9Y694 548 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 NAV1Q8NEY1 1877 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 CCDC144AA2RUR9 1427 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 NPATQ14207 1427 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 LRRK2Q5S007 2527 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 C2CD3Q4AC94 2353 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 A0A087WUJ7 227 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 LOC102724200A0A096LPH7 203 aaPredicted RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 OR11H12B2RN74 326 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 C8orf87E5RJ46 101 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 G3V2T6 193 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 H3BSA7 217 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 FFAR1O14842 300 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 TCF21O43680 179 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 OR7C2O60412 319 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 S1PR2O95136 353 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CRYZL1O95825 349 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CXorf1O96002 111 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 TTRP02766 147 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CTSEP14091 401 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CBR1P16152 277 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CTLA4P16410 223 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 ORM2P19652 201 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 OR10J1P30954 320 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 HSPA9P38646 679 aaKnown RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 REG1BP48304 166 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 PSMB3P49720 205 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 GZMMP51124 257 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CRYBA4P53673 196 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 RWDD2BP57060 319 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 RPS24P62847 133 aaKnown RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 RBX1P62877 108 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 IFITM2Q01629 132 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 IHHQ14623 411 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 JOSD1Q15040 202 aaPredicted RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 SP6Q3SY56 376 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 AKR1C8PQ5T2L2 129 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 LCN8Q6JVE9 175 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 SFXN4Q6P4A7 337 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 DCUN1D2Q6PH85 259 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 TBPL2Q6SJ96 375 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CYHR1Q6ZMK1 362 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 TMPPEQ6ZT21 453 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 CLEC20AQ6ZU45 233 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 TCF23Q7RTU1 214 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 GLT6D1Q7Z4J2 308 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 ATP5L2Q7Z4Y8 100 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 VN1R4Q7Z5H5 301 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 TMEM144Q7Z5S9 345 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 DOLPP1Q86YN1 238 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 SLC25A29Q8N8R3 303 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 ZDHHC22Q8N966 263 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 SPANXA2-OT1Q8N9U9 137 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 OR11H1Q8NG94 326 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 OR9I1Q8NGQ6 314 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 OR11H2Q8NH07 326 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 C2orf15Q8WU43 125 aaKnown RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 MAFIPQ8WZ33 124 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 YIPF5Q969M3 257 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 APOBEC3DQ96AK3 386 aaPredicted RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 C12orf43Q96C57 262 aaKnown RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 FXYD5Q96DB9 178 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 MS4A6EQ96DS6 147 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 SEC22CQ9BRL7 303 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 SHANK2-AS3Q9BTD1 123 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 THTPAQ9BU02 230 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 PBDC1Q9BVG4 233 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 SAMD10Q9BYL1 202 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 FAM107BQ9H098 131 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 PRTFDC1Q9NRG1 225 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 RBM12B-AS1Q9P1G2 102 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 RSL24D1Q9UHA3 163 aaKnown RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 PYCARDQ9ULZ3 195 aa1.33□□□□□ -2.2
CD44-239ENST00000639002 UTP11Q9Y3A2 253 aaKnown RBP1.33□□□□□ -2.2
CD44-239ENST00000639002 PCYT1BQ9Y5K3 369 aaPredicted RBP1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms