RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SCCPDHQ8NBX0 429 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 OR52L2PQ8NGH6 319 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 NEIL1Q96FI4 390 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM147Q9BVK8 224 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 SNHG12Q9BXW3 62 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 OR2D2Q9H210 308 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF703Q9H7S9 590 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-212ENST00000552491 GP6Q9HCN6 339 aa4.54□□□□□ -1.68
LIMA1-212ENST00000552491 TRBV20OR9-2A0A075B6H5 130 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 TRAV38-1A0A0B4J264 116 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 LRRC30A6NM36 301 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 C11orf94C9JXX5 98 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 RBFOX2O43251 390 aaKnown RBP eCLIP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 CFIP05156 583 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 GCH1P30793 250 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 OR3A1P47881 315 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 UBE2G2P60604 165 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 NUTF2P61970 127 aaKnown RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 MSMO1Q15800 293 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 Q6ZR03 302 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 TCF23Q7RTU1 214 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 LINC01551Q86U37 167 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 GBGT1Q8N5D6 347 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 ZBTB34Q8NCN2 500 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 OR2M7Q8NG81 312 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 OR10P1Q8NGE3 313 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 THOC3Q96J01 351 aaKnown RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 MRPL37Q9BZE1 423 aaKnown RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 C12orf49Q9H741 205 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 CBLN4Q9NTU7 201 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 WIPI2Q9Y4P8 454 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 COL27A1Q8IZC6 1860 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 LINC00473A8K010 186 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 C12orf77C9JDV5 145 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 WNT9BO14905 357 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 TCAPO15273 167 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 SYNGR4O95473 234 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 CD99P14209 185 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 CNN1P51911 297 aaKnown RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 VWC2Q2TAL6 325 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 PMS2CLQ68D20 193 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM144Q7Z5S9 345 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 MDP1Q86V88 176 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 LRP11Q86VZ4 500 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 MRPL41Q8IXM3 137 aaKnown RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 Q8IYB0 196 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF645Q8N7E2 425 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM105Q8N8V8 129 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF709Q8N972 641 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 MAFAQ8NHW3 353 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 DTD1Q8TEA8 209 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 CT55Q8WUE5 264 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 APH1AQ96BI3 265 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 BTF3L4Q96K17 158 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM204Q9BSN7 226 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 TP53TG3Q9ULZ0 132 aa4.53□□□□□ -1.68
LIMA1-212ENST00000552491 POLR3KQ9Y2Y1 108 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 SMG1Q96Q15 3661 aaKnown RBP4.53□□□□□ -1.68
LIMA1-212ENST00000552491 ZDBF2Q9HCK1 2354 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 C15orf62A8K5M9 175 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 C17orf112F2Z3M2 114 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 SOX15O60248 233 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 NDUFB4O95168 129 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 PDGFBP01127 241 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 SERPINA7P05543 415 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 FRMD6-AS1P0C7T7 363 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 CD82P27701 267 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 CASP6P55212 293 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 LINC00310P59036 64 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 AESQ08117 197 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 FOXL1Q12952 345 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF146Q15072 292 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 TRIP6Q15654 476 aaKnown RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 TDRG1Q3Y452 100 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF826PQ6ZT77 177 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 TPRX1Q8N7U7 411 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 CIB3Q96Q77 187 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 IMMP2LQ96T52 175 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 CDX2Q99626 313 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 OR2J1Q9GZK6 312 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 BOKQ9UMX3 212 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 IGHV3-43A0A0B4J1X8 118 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 A0A0U1RQK1 487 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF320A2RRD8 509 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 RRHO14718 337 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 TMPRSS2O15393 492 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 PDE6DO43924 150 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 NXPH2O95156 264 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 HBZP02008 142 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 GRPP07492 148 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 IGHV3-43DP0DP04 118 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 CDC34P49427 236 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 ERVFC1-1P60608 527 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 TMEM249Q2WGJ8 235 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 ZNF766Q5HY98 468 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 CXorf67Q86X51 503 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 TMEM251Q8N6I4 163 aa4.52□□□□□ -1.69
LIMA1-212ENST00000552491 BCL2L2Q92843 193 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-212ENST00000552491 GUCD1Q96NT3 240 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms