RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAM24AA6NFZ4 105 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 SSSCA1O60232 199 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 DFFBO76075 338 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 CLDN1O95832 211 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 OMGP23515 440 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 CXorf66Q5JRM2 361 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 PUSL1Q8N0Z8 303 aaKnown RBP14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 CLRN3Q8NCR9 226 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 AGMATQ9BSE5 352 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 PBDC1Q9BVG4 233 aa14.98□□□□□ -0.01
CCDC88C-203ENST00000389856 BTBD17A6NE02 478 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 FAM90A26D6RGX4 464 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 RAB29O14966 203 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 RBP4P02753 201 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 ATF4P18848 351 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 KIR2DS2P43631 304 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 TAS2R30P59541 319 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 PRAMEF5Q5TYX0 476 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 DHRS7BQ6IAN0 325 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 DPPA3Q6W0C5 159 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 STX12Q86Y82 276 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 TCTEX1D2Q8WW35 142 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 GPR146Q96CH1 333 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 ADTRPQ96IZ2 230 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 COA4Q9NYJ1 87 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 WSB1Q9Y6I7 421 aa14.97□□□□□ -0.01
CCDC88C-203ENST00000389856 ZNF462Q96JM2 2506 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 OVOL3O00110 214 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 SNCAP37840 140 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 AKR1C2P52895 323 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 SRSF3P84103 164 aaKnown RBP14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 AKR1C1Q04828 323 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 C8orf31Q8N9H6 132 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 S1PR3Q99500 378 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 CCL19Q99731 98 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 HIPK2Q9H2X6 1198 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 PATZ1Q9HBE1 687 aaKnown RBP14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 PRELID3BQ9Y3B1 194 aa14.96□□□□□ -0.01
CCDC88C-203ENST00000389856 CHST1O43916 411 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 PRH1P02810 166 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 H2AFB1P0C5Y9 115 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 FGFRL1Q8N441 504 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 C8orf46Q8TAG6 207 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 IFI27L2Q9H2X8 130 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 LY6HO94772 140 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 SFTA3P0C7M3 94 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 GNB2P62879 340 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 EIF4EBP1Q13541 118 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 GUCA2BQ16661 112 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 WDR25Q64LD2 544 aaPredicted RBP14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 ZNF841Q6ZN19 808 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 ATP5SQ99766 215 aa14.95□□□□□ -0.02
CCDC88C-203ENST00000389856 MYO18BQ8IUG5 2567 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 KIAA1324LA8MWY0 1029 aaPredicted RBP14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 M0R1X1 148 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 RNF224P0DH78 156 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 SULT1A1P50225 295 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 PDLIM4P50479 330 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 MIDNQ504T8 468 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 CT45A1Q5HYN5 189 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 CLEC9AQ6UXN8 241 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 SLC25A48Q6ZT89 311 aaKnown RBP14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 HSD17B11Q8NBQ5 300 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 ZNF439Q8NDP4 499 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 OR5C1Q8NGR4 320 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 CT45A3Q8NHU0 189 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 GPHA2Q96T91 129 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM96BQ9Y3D0 163 aa14.94□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM74A7A6NL05 159 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM157AC9JC47 383 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 RBFOX2O43251 390 aaKnown RBP eCLIP14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 TXNL1O43396 289 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 LIPFP07098 398 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 CCL3L1P16619 93 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 IL3RAP26951 378 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 ATP6V0CP27449 155 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 THBS3P49746 956 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 PAX9P55771 341 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 ZNF616Q08AN1 781 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 GUK1Q16774 197 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM74A3Q4VXF1 159 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 LYG1Q8N1E2 194 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 OR2G3Q8NGZ4 309 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 TNFRSF14Q92956 283 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 MAGT1Q9H0U3 335 aa14.93□□□□□ -0.02
CCDC88C-203ENST00000389856 A0A087X0M5 115 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 PPIAL4CA0A0B4J2A2 164 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 A0A1B0GX30 115 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 C17orf98A8MV24 154 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 TOR1AO14656 332 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 SYNGR2O43760 224 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 FCN3O75636 299 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 IFNA5P01569 189 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 PPIAL4GP0DN37 164 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 DUTP33316 252 aaKnown RBP14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 GNG10P50151 68 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 DYNLT3P51808 116 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM53AQ6NSI3 398 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM122CQ6P4D5 195 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 BTNL3Q6UXE8 466 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms