RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ALKAL2Q6UX46 152 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 TRAV8-6A0A0B4J262 113 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 ALPLP05186 524 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 ERVFC1-1P60608 527 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 ZNF66Q6ZN08 573 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 PRNTQ86SH4 94 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 SIAH3Q8IW03 269 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 SBF1O95248 1867 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 NINQ8N4C6 2090 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 A0A0U1RQV5 110 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 CD5P06127 495 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 SAA4P35542 130 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 LEPP41159 167 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 SLC51BQ86UW2 128 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 PARP16Q8N5Y8 322 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 DLX4Q92988 240 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 FAM210BQ96KR6 192 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 PGLYRP3Q96LB9 341 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 SGK494Q96LW2 274 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 DMRTA2Q96SC8 542 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 ASCL2Q99929 193 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 DPRXA6NFQ7 191 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 SNAI3Q3KNW1 292 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 GAPTQ8N292 157 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 COMMD1Q8N668 190 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 IL20Q9NYY1 176 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 TBL2Q9Y4P3 447 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 PPP1R2P9O14990 202 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 S100A11P31949 105 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 CD81P60033 236 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 TMEM155Q4W5P6 130 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 FAM78BQ5VT40 261 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 PXT1Q8NFP0 134 aa7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 RPUSD4Q96CM3 377 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-202ENST00000381753 MYO7BQ6PIF6 2116 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 OR10J1P30954 320 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 MFAP2P55001 183 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 RMI2Q96E14 147 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 RHOVQ96L33 236 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 SLC25A15Q9Y619 301 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 DEFB130BP0DP73 79 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 DEFB130AP0DP74 79 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 CRYBB2P43320 205 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 IGLV3-21P80748 117 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 FABP9Q0Z7S8 132 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 FDX2Q6P4F2 183 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 TMEM123Q8N131 208 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 ZNF645Q8N7E2 425 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 TMEM116Q8NCL8 245 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 OR5P3Q8WZ94 311 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 RSG1Q9BU20 258 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 TCRBV3S1A0A5B6 114 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 OR4C45A6NMZ5 311 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 CD1AP06126 327 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 PSMG4Q5JS54 123 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 C1QL4Q86Z23 238 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 EIF4E3Q8N5X7 224 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 IQCF6A8MYZ5 107 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 TCRBP04435 133 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 FAM157CP0CG43 387 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 HERVK_113P61574 105 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 LSAMPQ13449 338 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 HAGHQ16775 308 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 KHDC3LQ587J8 217 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 ZNF474Q6S9Z5 364 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 FUNDC1Q8IVP5 155 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 PTX4Q96A99 478 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 UBE2E2Q96LR5 201 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 SOSTQ9BQB4 213 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 TMEM167BQ9NRX6 74 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 A0A0G2JMZ2 1700 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 LRRC37A2A6NM11 1700 aa7.74□□□□□ -1.17
LIMCH1-202ENST00000381753 TMEM272A0A1B0GTI8 110 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 TEX50A0A1B0GTY4 177 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 ZNF701M0R085 212 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 PSG5Q15238 335 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 CRIPAKQ8N1N5 446 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 OR5AN1Q8NGI8 311 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 GALNT14Q96FL9 552 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 MYO16Q9Y6X6 1858 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 LOC285556D6RIA3 1793 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 TMEM178BH3BS89 294 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 POLR2IP36954 125 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 FAM90A1Q86YD7 464 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 CLRN3Q8NCR9 226 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 OR4C16Q8NGL9 310 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 DKK4Q9UBT3 224 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 A0A1B0GTL3 188 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 TCF24Q7RTU0 167 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 RNF144BQ7Z419 303 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 LRP11Q86VZ4 500 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 RPRMLQ8N4K4 120 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 NECAP1Q8NC96 275 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 DOCK5Q9H7D0 1870 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 KBTBD11-OT1A0A1B0GTJ5 212 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 ZAR1LA6NP61 321 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 H7C1H1 209 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 SSTR5P35346 364 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 GNG4P50150 75 aa7.73□□□□□ -1.17
LIMCH1-202ENST00000381753 PAX8Q06710 450 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms