RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 PPP1CBP62140 327 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 C1orf194Q5T5A4 169 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 ZNF705AQ6ZN79 300 aaPredicted RBP15.46■□□□□ 0.07
CCDC3-201ENST00000378825 TMEM144Q7Z5S9 345 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 CXorf67Q86X51 503 aaPredicted RBP15.46■□□□□ 0.07
CCDC3-201ENST00000378825 SCCPDHQ8NBX0 429 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 TMEM45BQ96B21 275 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 PXMP4Q9Y6I8 212 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 F2Z2F3 143 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 LINC00310P59036 64 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 IGHV3-43A0A0B4J1X8 118 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 M0R143 59 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 P0C879 139 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 IGHV3-43DP0DP04 118 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 CCKARP32238 428 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 CYB561P49447 251 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 LHX2P50458 406 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 KCNIP4Q6PIL6 250 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 DEFB108AA8MXU0 73 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 CELA3BP08861 270 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 CBLN1P23435 193 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 CDKN1AP38936 164 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 C6orf15Q6UXA7 325 aaPredicted RBP15.45■□□□□ 0.06
CCDC3-201ENST00000378825 Q6ZWC4 215 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 LINC00596Q86U02 117 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 ZNF709Q8N972 641 aa15.45■□□□□ 0.06
CCDC3-201ENST00000378825 KIR2DL5BA0A0G2JN68 375 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 KIR2DL5BA0A0G2JPC4 375 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 LRP5LA4QPB2 252 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 J3QT63 122 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 WNT9BO14905 357 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 RAB4AP20338 218 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 KIR2DL5AQ8N109 375 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 IGKV3D-15A0A087WSY6 115 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 OR5B21A6NL26 309 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 C12orf77C9JDV5 145 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 NXPH2O95156 264 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 GRPP07492 148 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 CLDN18P56856 261 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 AESQ08117 197 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 PEAR1Q5VY43 1037 aaPredicted RBP15.44■□□□□ 0.06
CCDC3-201ENST00000378825 ELOVL5Q9NYP7 299 aa15.44■□□□□ 0.06
CCDC3-201ENST00000378825 HCFC1P51610 2035 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 LINC00473A8K010 186 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 FAM90A26D6RGX4 464 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 VENTXO95231 258 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 SYNGR4O95473 234 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 HPRT1P00492 218 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 NPSP0C0P6 89 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 MAGEA5P43359 124 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 TOMM20LQ6UXN7 152 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 ZNF826PQ6ZT77 177 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 RFESDQ8TAC1 157 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 MSL2Q9HCI7 577 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.43■□□□□ 0.06
CCDC3-201ENST00000378825 MBNL3Q9NUK0 354 aaKnown RBP15.43■□□□□ 0.06
CCDC3-201ENST00000378825 MPC1Q9Y5U8 109 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 C19orf67A6NJJ6 358 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 TMEM210A6NLX4 147 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 SLC17A3O00476 420 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 IRF2P14316 349 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 NRN1LQ496H8 165 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 RNF114Q9Y508 228 aa15.43■□□□□ 0.06
CCDC3-201ENST00000378825 CFAP47Q6ZTR5 3102 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 SCO2A0A1W2PP80 73 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 RRHO14718 337 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 TGFBR3Q03167 851 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 PLP2Q04941 152 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 HLA-DRB5Q30154 266 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 Q6ZR03 302 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 ZNF645Q8N7E2 425 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 APH1AQ96BI3 265 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 DCHS1Q96JQ0 3298 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 C15orf62A8K5M9 175 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 LCN2P80188 198 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 SFRP2Q96HF1 295 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 LINC00470Q9BZP3 86 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 ARRDC1-AS1Q9H2J1 176 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 FOXJ2Q9P0K8 574 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 PAM16Q9Y3D7 125 aa15.42■□□□□ 0.06
CCDC3-201ENST00000378825 MBP02144 154 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 SOX8P57073 446 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 LTC4SQ16873 150 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 MDP1Q86V88 176 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 MRGPRDQ8TDS7 321 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 QTRT1Q9BXR0 403 aaKnown RBP15.41■□□□□ 0.06
CCDC3-201ENST00000378825 PKIBQ9C010 78 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 OR2J1Q9GZK6 312 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 ARL14EPLP0DKL9 152 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 ERVK11-1P61568 191 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 BATFQ16520 125 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 TMEM208Q9BTX3 173 aa15.41■□□□□ 0.06
CCDC3-201ENST00000378825 SERPINA7P05543 415 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 SSTR5P35346 364 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 SSPNQ14714 243 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 MSMO1Q15800 293 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 LINC00696Q6ZRV3 163 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 DEFB123Q8N688 67 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 OCC1Q8TAD7 63 aa15.4■□□□□ 0.06
CCDC3-201ENST00000378825 CMTM2Q8TAZ6 248 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms