RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 C1orf229Q6ZS94 237 aaPredicted RBP15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 LHX4Q969G2 390 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 YPEL4Q96NS1 127 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 HCFC1P51610 2035 aa15.22■□□□□ 0.03
SHKBP1-201ENST00000291842 LOXL3P58215 753 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 Q8TCH9 128 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 PINX1Q96BK5 328 aaKnown RBP15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 TMEM147Q9BVK8 224 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 PARD6GQ9BYG4 376 aaPredicted RBP15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 DCHS1Q96JQ0 3298 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 C5orf52A6NGY3 159 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 FAM90A1Q86YD7 464 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 TGIF2LYQ8IUE0 185 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 CA5BP1Q8WTZ4 195 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 LAMP3Q9UQV4 416 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 BSNQ9UPA5 3926 aa15.21■□□□□ 0.03
SHKBP1-201ENST00000291842 CYB5R3P00387 301 aaPredicted RBP15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 LHBP01229 141 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 EIF2S3P41091 472 aaKnown RBP15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 RPS10P46783 165 aaKnown RBP15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 PAX5Q02548 391 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 RTP5Q14D33 572 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 HEPN1Q6WQI6 88 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 TCTEX1D1Q8N7M0 179 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 PPP1R35Q8TAP8 253 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 JPT1Q9UK76 154 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 ADGRG4Q8IZF6 3080 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 CXCL1P09341 107 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 CFHR2P36980 270 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 ERVFRD-1P60508 538 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 FFAR4Q5NUL3 377 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 PRAMEF5Q5TYX0 476 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 PRSS33Q8NF86 280 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 Q8WTZ3 238 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 CALYQ9NYX4 217 aa15.2■□□□□ 0.02
SHKBP1-201ENST00000291842 TRAV3A0A0B4J244 114 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 YPEL1O60688 119 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 TIMP3P35625 211 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 FABP9Q0Z7S8 132 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 RBMS3Q6XE24 437 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 SLC35E3Q7Z769 313 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 OR10G4Q8NGN3 311 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 OR10G9Q8NGN4 311 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 OR10G7Q8NGN6 311 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 GATAD1Q8WUU5 269 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 CIB3Q96Q77 187 aaPredicted RBP15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 YPEL2Q96QA6 119 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 IFI27L2Q9H2X8 130 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 ROS1P08922 2347 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 TGIF2-C20orf24A0A0A6YYL0 155 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 IFNA4P05014 189 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 NQO2P16083 231 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 ELOBQ15370 118 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 MRGPRGQ86SM5 289 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 NPCDR1Q9BY65 106 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 GCM1Q9NP62 436 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 VAX2Q9UIW0 290 aa15.19■□□□□ 0.02
SHKBP1-201ENST00000291842 ACACAQ13085 2346 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 IGLV3-9A0A075B6K5 115 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 C15orf62A8K5M9 175 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 TNFAIP6P98066 277 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 ATP6V1FQ16864 119 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 DCAF16Q9NXF7 216 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 SH3BGRL2Q9UJC5 107 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 TIMM9Q9Y5J7 89 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 KALRNO60229 2985 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 HPRT1P00492 218 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 CRYABP02511 175 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 C17orf58Q2M2W7 97 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 OR6C3Q9NZP0 311 aa15.18■□□□□ 0.02
SHKBP1-201ENST00000291842 PCNX1Q96RV3 2341 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 A0A087WWC5 75 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 A8MXE2 369 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 F2RL2O00254 374 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 IGHV1-46P01743 117 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 CR1LQ2VPA4 569 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 CENPVQ7Z7K6 275 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 OR4A16Q8NH70 328 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 SFXN3Q9BWM7 321 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 PTPRZ1P23471 2315 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 CEACAM8P31997 349 aaPredicted RBP15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 MAS1LP35410 378 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 MEOX2P50222 304 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 ZNF674Q2M3X9 581 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 FAM57AQ8TBR7 257 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 SNRNP40Q96DI7 357 aaKnown RBP15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 MALSU1Q96EH3 234 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 S1PR3Q99500 378 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 CCL13Q99616 98 aa15.17■□□□□ 0.02
SHKBP1-201ENST00000291842 ZGRF1Q86YA3 2104 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 SMCO3A2RU48 225 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 IFNA10P01566 189 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 GYPAP02724 150 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 CD40P25942 277 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 CD81P60033 236 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 CT45A1Q5HYN5 189 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 ZCCHC24Q8N2G6 241 aaKnown RBP15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 ZNF709Q8N972 641 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 CT45A3Q8NHU0 189 aa15.16■□□□□ 0.02
SHKBP1-201ENST00000291842 RNF7Q9UBF6 113 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms