RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 AP5S1Q9NUS5 200 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 OR51G1Q8NGK1 321 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 TSSC4Q9Y5U2 329 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 PXMP4Q9Y6I8 212 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 CER1O95813 267 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 GPX1P07203 203 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 CEACAM3P40198 252 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 PRDX1Q06830 199 aaKnown RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 WDR38Q5JTN6 314 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 TRAV26-1A0A087WT03 109 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 IGFBP2P18065 325 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 ZP4Q12836 540 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 OLIG3Q7RTU3 272 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 B5MCH6 92 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 C1QCP02747 245 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.31□□□□□ -1.722e-6■■■■□ 20.7
VPS13D-213ENST00000613099 LIPHQ8WWY8 451 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 IL17FQ96PD4 163 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 RTN4RQ9BZR6 473 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 B9D1Q9UPM9 204 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 NPIPB13A6NJU9 1138 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 NPIPB4C9JG80 1138 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 HOXA3O43365 443 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 ERHP84090 104 aaKnown RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 MPV17L2Q567V2 206 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 RASL11AQ6T310 242 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 Q8IYB0 196 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 TTC9CQ8N5M4 171 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 FER1L6-AS2Q96M78 137 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 SDF2Q99470 211 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 RBPJLQ9UBG7 517 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 NRG2O14511 850 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 MPDU1O75352 247 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 FCN3O75636 299 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 KIR2DS2P43631 304 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 SUMO3P55854 103 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 ANKRD33Q7Z3H0 272 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 DLX4Q92988 240 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 AURKAIP1Q9NWT8 199 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 ICAM5Q9UMF0 924 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 PKIGQ9Y2B9 76 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 CRYM-AS1A6NIL9 109 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 SCD5Q86SK9 330 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 OR52N5Q8NH56 324 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 TAAR3PQ9P1P4 343 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 DOCK3Q8IZD9 2030 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 MLNRO43193 412 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM50AO95807 157 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 RELBQ01201 579 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 RPL18Q07020 188 aaKnown RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 Q0VG73 95 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TWIST1Q15672 202 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TPRX1Q8N7U7 411 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TRAV8-1A0A0A6YYK1 113 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 M0R3E3 92 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 C1orf100Q5SVJ3 147 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 GPR27Q9NS67 375 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 WNT16Q9UBV4 365 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TRAV2A0A0B4J234 112 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TRAV5A0A0B4J249 113 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 GDF1P27539 372 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 ASIPP42127 132 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TBC1D28Q2M2D7 210 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF479Q96JC4 524 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 C19orf24Q9BVV8 132 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 IGLC2P0DOY2 106 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 IGLC3P0DOY3 106 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 FSTP19883 344 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 SSBP3Q9BWW4 388 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 PGPEP1Q9NXJ5 209 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF407Q9C0G0 2248 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 NDUFC2O95298 119 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 B3GALT4O96024 378 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 LAIR1Q6GTX8 287 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 SLC35E4Q6ICL7 350 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 ANKRD10Q9NXR5 420 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 SP1P08047 785 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 CA7P43166 264 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 CD99L2Q8TCZ2 262 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 COMMD5Q9GZQ3 224 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 CYTL1Q9NRR1 136 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 OR2T8A6NH00 312 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 B4DGG1 531 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TRACP01848 142 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 SLC16A11Q8NCK7 471 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 PERPQ96FX8 193 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 HILPDAQ9Y5L2 63 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 A0A0B4J2E0 115 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 A0A1B0GX12 115 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 ODAMA1E959 279 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 SLC25A5P05141 298 aaKnown RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 GABRG2P18507 467 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF157P51786 506 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 UBE2L3P68036 154 aaKnown RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 MS4A4AQ96JQ5 239 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 LINC01553A4QN01 128 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 GPR6P46095 362 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 RAE1P78406 368 aaKnown RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 890 ms