RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 PHLDA2Q53GA4 152 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 TMEM128Q5BJH2 165 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 MINOS1Q5TGZ0 78 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 ZNF66Q6ZN08 573 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 TBC1D26Q86UD7 250 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 BCL6BQ8N143 479 aaPredicted RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 LYG1Q8N1E2 194 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 ZNF383Q8NA42 475 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 MINDY2Q8NBR6 621 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 OR5AN1Q8NGI8 311 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 CAPSLQ8WWF8 208 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 RTN4IP1Q8WWV3 396 aaPredicted RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 TOMM40LQ969M1 308 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 NABP2Q9BQ15 211 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 ABHD14AQ9BUJ0 271 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 BEX2Q9BXY8 128 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 OR2D2Q9H210 308 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 PRDM13Q9H4Q3 707 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 BEX1Q9HBH7 125 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 SLC2A9Q9NRM0 540 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 NUDT15Q9NV35 164 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 PFDN2Q9UHV9 154 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 KCNIP3Q9Y2W7 256 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 RBM7Q9Y580 266 aaKnown RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 MINOS1-NBL1R4GNA1 71 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 ANKRD17O75179 2603 aaKnown RBP4.8□□□□□ -1.64
USP39-213ENST00000467885 ZANQ9Y493 2812 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 VPS13CQ709C8 3753 aa4.8□□□□□ -1.64
USP39-213ENST00000467885 CCDC168Q8NDH2 2452 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 YLPM1P49750 1951 aaKnown RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 IGHV3OR16-10A0A075B7F0 116 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 IGHV1-3A0A0C4DH29 117 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 C3orf85A0A1B0GTC6 90 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 A0A1B0GVG6 124 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 C7orf66A4D0T2 115 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 SRRM4A7MD48 611 aaKnown RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 M0R1X1 148 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 NPFFO15130 113 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 TNFSF12O43508 249 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 SFT2D2O95562 160 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 CDS2O95674 445 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 IGKV1-39P01597 117 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 IGKV1D-39P04432 117 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 RLN1P04808 185 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 IL6RP08887 468 aaPredicted RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 LPAR6P43657 344 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 GPR12P47775 334 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 REG1BP48304 166 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 RAB13P51153 203 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 ZNF816Q0VGE8 651 aaPredicted RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 PPP1R1AQ13522 171 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 EBI3Q14213 229 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 TMEM187Q14656 261 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 SSX2Q16385 188 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 C2orf68Q2NKX9 166 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 TRIM16LQ309B1 348 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 ANKRD55Q3KP44 614 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 FAM120AOSQ5T036 256 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 TPTE2P1Q5T6R2 138 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 RUSC1-AS1Q66K80 236 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 BRD3OSQ6XYD6 125 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 GLDNQ6ZMI3 551 aaPredicted RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 TMED4Q7Z7H5 227 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 THNSL2Q86YJ6 484 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 CMTM1Q8IZ96 169 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 OR52B4Q8NGK2 314 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 OR10X1Q8NGY0 326 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 NANPQ8TBE9 248 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 ENKURQ8TC29 256 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 CFHR4Q92496 578 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 GALNT14Q96FL9 552 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 TMEM56Q96MV1 263 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 TP53RKQ96S44 253 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 S1PR3Q99500 378 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 HSD17B10Q99714 261 aaKnown RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 C20orf85Q9H1P6 137 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 GSX1Q9H4S2 264 aaPredicted RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 YAE1D1Q9NRH1 226 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 NUP50Q9UKX7 468 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 C14orf166Q9Y224 244 aaKnown RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 TBL2Q9Y4P3 447 aaKnown RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 HILPDAQ9Y5L2 63 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 TMEM56-RWDD3S4R434 201 aa4.79□□□□□ -1.64
USP39-213ENST00000467885 SETXQ7Z333 2677 aaKnown RBP4.79□□□□□ -1.64
USP39-213ENST00000467885 CSMD1Q96PZ7 3565 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 A0A0B4J2A0 478 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 A0A0U1RQK1 487 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 A0A1W2PPI3 338 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 A8MV72 311 aaPredicted RBP4.78□□□□□ -1.64
USP39-213ENST00000467885 SNRPGP15A8MWD9 76 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 OOSP1A8MZH6 123 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 H0YJW9 148 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 RAMP3O60896 148 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 DUS4LO95620 317 aaKnown RBP4.78□□□□□ -1.64
USP39-213ENST00000467885 DHFRP00374 187 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 HLA-GP17693 338 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 EPHA1P21709 976 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 UCP1P25874 307 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 CD1BP29016 333 aa4.78□□□□□ -1.64
USP39-213ENST00000467885 MC5RP33032 325 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms