RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TRIM77I1YAP6 450 aa15.04■□□□□ -0
CCDC88C-203ENST00000389856 DVL1O14640 695 aa15.04■□□□□ -0
CCDC88C-203ENST00000389856 LPAR6P43657 344 aa15.04■□□□□ -0
CCDC88C-203ENST00000389856 DUX4L9Q6RFH8 374 aaPredicted RBP15.04■□□□□ -0
CCDC88C-203ENST00000389856 H1FXQ92522 213 aaKnown RBP15.04■□□□□ -0
CCDC88C-203ENST00000389856 LSM10Q969L4 123 aaKnown RBP15.04■□□□□ -0
CCDC88C-203ENST00000389856 OR2D2Q9H210 308 aa15.04■□□□□ -0
CCDC88C-203ENST00000389856 HRH4Q9H3N8 390 aa15.04■□□□□ -0
CCDC88C-203ENST00000389856 TREM1Q9NP99 234 aa15.04■□□□□ -0
CCDC88C-203ENST00000389856 FBXO24O75426 580 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 SNAPINO95295 136 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 SERPINE2P07093 398 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 EFNA4P52798 201 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 EWSR1Q01844 656 aaKnown RBP eCLIP15.03■□□□□ -0
CCDC88C-203ENST00000389856 MORN2Q502X0 79 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 OR8B3Q8NGG8 313 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 ZNF714Q96N38 554 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 OR8B2Q96RD0 313 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 SMIM3Q9BZL3 60 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 MS4A7Q9GZW8 240 aaPredicted RBP15.03■□□□□ -0
CCDC88C-203ENST00000389856 GFOD1Q9NXC2 390 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 DSCAML1Q8TD84 2053 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 F8W036 122 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 PPIHO43447 177 aaKnown RBP15.03■□□□□ -0
CCDC88C-203ENST00000389856 F12P00748 615 aaPredicted RBP15.03■□□□□ -0
CCDC88C-203ENST00000389856 CD5P06127 495 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 GPR12P47775 334 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 DVL1P1P54792 670 aaPredicted RBP15.03■□□□□ -0
CCDC88C-203ENST00000389856 LTC4SQ16873 150 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 C17orf58Q2M2W7 97 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 Q3ZCU0 254 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 ZNF66Q6ZN08 573 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 Q6ZRG5 221 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 DRAM1Q8N682 238 aa15.03■□□□□ -0
CCDC88C-203ENST00000389856 HSD17B10Q99714 261 aaKnown RBP15.03■□□□□ -0
CCDC88C-203ENST00000389856 IGHV3-43A0A0B4J1X8 118 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 UMAD1C9J7I0 102 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 RNASEK-C17orf49H0YIS7 233 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 DNASE2O00115 360 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 TSPAN4O14817 238 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 IGHV3-43DP0DP04 118 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 LOXL3P58215 753 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 LYPD2Q6UXB3 125 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 LFNGQ8NES3 379 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 NEIL1Q96FI4 390 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 WFDC1Q9HC57 220 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 PSG11Q9UQ72 335 aa15.02□□□□□ -0.01
CCDC88C-203ENST00000389856 A0A1W2PPR1 153 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 LYNX1G3V0Z9 82 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 WRBO00258 174 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 TNFSF12O43508 249 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 LYNX1P0DP58 116 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 OR51H1Q8NH63 302 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 RAB40CQ96S21 281 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 GAB2Q9UQC2 676 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 DOPEY1Q5JWR5 2465 aa15.01□□□□□ -0.01
CCDC88C-203ENST00000389856 SMG1Q96Q15 3661 aaKnown RBP15□□□□□ -0.01
CCDC88C-203ENST00000389856 TSPAN15O95858 294 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 ATRAIDQ6UW56 229 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 HEPN1Q6WQI6 88 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 TMEM252Q8N6L7 170 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 GNPNAT1Q96EK6 184 aaPredicted RBP15□□□□□ -0.01
CCDC88C-203ENST00000389856 ABHD14AQ9BUJ0 271 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 PARP12Q9H0J9 701 aaKnown RBP15□□□□□ -0.01
CCDC88C-203ENST00000389856 C19orf12Q9NSK7 152 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 CTSZQ9UBR2 303 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 RPUSD1Q9UJJ7 312 aaKnown RBP15□□□□□ -0.01
CCDC88C-203ENST00000389856 RNF150Q9ULK6 438 aa15□□□□□ -0.01
CCDC88C-203ENST00000389856 IGLV2-14P01704 120 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 COX6B1P14854 86 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 NFYBP25208 207 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 GPR6P46095 362 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 POLR2GP62487 172 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 NHLH2Q02577 135 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 PEA15Q15121 130 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 CD300LFQ8TDQ1 290 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 SMDT1Q9H4I9 107 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 PLA2G2EQ9NZK7 142 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 CACFD1Q9UGQ2 172 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 ADGRG4Q8IZF6 3080 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 A0A1B0GW64 132 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 hCG_1809904A0A1W2PP81 198 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 A0A1W2PPE2 198 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 A0A1W2PR64 198 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 A0A1W2PRV1 198 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 MEX3AA1L020 520 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 ST8SIA5O15466 376 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 ZNF16P17020 682 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 ADCYAP1P18509 176 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 CDKN1AP38936 164 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 CAMLGP49069 296 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 RPL23AP62750 156 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 AVPI1Q5T686 147 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 TMEM200BQ69YZ2 307 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 TCF23Q7RTU1 214 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 RNASE11Q8TAA1 199 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 BSCL2Q96G97 398 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 KPTNQ9Y664 436 aa14.99□□□□□ -0.01
CCDC88C-203ENST00000389856 IGSF23A1L1A6 192 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms