RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CADP27708 2225 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 ZG16O60844 167 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 LHBP01229 141 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 MORN2Q502X0 79 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 NCR3LG1Q68D85 454 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 ZNF787Q6DD87 383 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 EDARADDQ8WWZ3 215 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 RAB39BQ96DA2 213 aa17.32■□□□□ 0.36
CCDC88B-203ENST00000359902 PMS2P5A8MQ11 134 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 C1orf196B1AJZ1 125 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 SPRY3O43610 288 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 RPS23P62266 143 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 TMEM41BQ5BJD5 291 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 ZNRF1Q8ND25 227 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 DTD1Q8TEA8 209 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 ZDHHC16Q969W1 377 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 ZNF665Q9H7R5 613 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 RAB5AP20339 215 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 PPP1R35Q8TAP8 253 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 PINX1Q96BK5 328 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 PLPPR2Q96GM1 343 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 MRPL37Q9BZE1 423 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 GNG12Q9UBI6 72 aa17.31■□□□□ 0.36
CCDC88B-203ENST00000359902 IGLV3-9A0A075B6K5 115 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 MARCH11A6NNE9 402 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 CRYABP02511 175 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 AGAP20933 346 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 DUTP33316 252 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 GPR12P47775 334 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 MEOX2P50222 304 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 FGF8P55075 233 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 CENPVQ7Z7K6 275 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 OR10G4Q8NGN3 311 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 JPT1Q9UK76 154 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 hCG_1809904A0A1W2PP81 198 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 A0A1W2PR64 198 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 A0A1W2PRV1 198 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 KLK10O43240 276 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 OR2C1O95371 312 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 ELLP55199 621 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 ATP6V1FQ16864 119 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 ZNF561Q8N587 486 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 ITLN1Q8WWA0 313 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 YPEL4Q96NS1 127 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 CISD1Q9NZ45 108 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 TIMM9Q9Y5J7 89 aa17.3■□□□□ 0.36
CCDC88B-203ENST00000359902 YPEL1O60688 119 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 CEACAM8P31997 349 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 MAS1LP35410 378 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 LOXL3P58215 753 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 PRSS33Q8NF86 280 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 YPEL2Q96QA6 119 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 SFXN3Q9BWM7 321 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 ZFP92A6NM28 416 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 RBMXL2O75526 392 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 BCL2P10415 239 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 TAGLN2P37802 199 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 C22orf34Q6ZV56 151 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 R3HDM4Q96D70 268 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 CIB3Q96Q77 187 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 TMEM147Q9BVK8 224 aa17.29■□□□□ 0.36
CCDC88B-203ENST00000359902 F2RL2O00254 374 aa17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 ATXN7O15265 892 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 DLK1P80370 383 aa17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 LURAP1LQ8IV03 231 aa17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 RPP25LQ8N5L8 163 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 TVP23CQ96ET8 276 aa17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 NIPSNAP3BQ9BS92 247 aa17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 NBEAQ8NFP9 2946 aa17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 LAMA5O15230 3695 aa17.28■□□□□ 0.36
CCDC88B-203ENST00000359902 IGKV1D-33P01593 117 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 IGKV1-33P01594 117 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 ZNF134P52741 427 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 EDDM3BP56851 147 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 FAM27E3Q08E93 113 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 SPINK9Q5DT21 86 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 FAM201AQ5SY85 155 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 OR10P1Q8NGE3 313 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 DOCK11Q5JSL3 2073 aa17.27■□□□□ 0.36
CCDC88B-203ENST00000359902 CEBPZOSA8MTT3 80 aa17.27■□□□□ 0.35
CCDC88B-203ENST00000359902 ZNF727A8MUV8 499 aa17.27■□□□□ 0.35
CCDC88B-203ENST00000359902 FCGR3BO75015 233 aa17.27■□□□□ 0.35
CCDC88B-203ENST00000359902 HNF4GQ14541 408 aa17.27■□□□□ 0.35
CCDC88B-203ENST00000359902 FAM57AQ8TBR7 257 aa17.27■□□□□ 0.35
CCDC88B-203ENST00000359902 FAM216AQ8WUB2 273 aa17.27■□□□□ 0.35
CCDC88B-203ENST00000359902 QTRT1Q9BXR0 403 aaKnown RBP17.27■□□□□ 0.35
CCDC88B-203ENST00000359902 A0A087WWC5 75 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 MAP1LC3B2A6NCE7 125 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 A8MXE2 369 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 IGHV3-7P01780 117 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 IFNA4P05014 189 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 OR9G9P0C7N8 305 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 GATA4P43694 442 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 RPS16P62249 146 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 SNRPEP62304 92 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 KRTCAP3Q53RY4 240 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 FAM90A2PQ658T7 463 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 SLC35E3Q7Z769 313 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 MALSU1Q96EH3 234 aa17.26■□□□□ 0.35
CCDC88B-203ENST00000359902 MAP1LC3BQ9GZQ8 125 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms