RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CENPOQ9BU64 300 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 GON7Q9BXV9 100 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP28-204ENST00000537642 IGKV1D-8A0A087WSZ0 117 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 TRBV6-7A0A0A0MS04 114 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 IGHV7-81A0A0B4J1V7 117 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 HLA-DRB1P01911 266 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 RPLP1P05386 114 aaKnown RBP11.6□□□□□ -0.55
USP28-204ENST00000537642 IGLL1P15814 213 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 MC5RP33032 325 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 TALDO1P37837 337 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 LINC00205P59089 165 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 SRSF7Q16629 238 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP28-204ENST00000537642 CDNFQ49AH0 187 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 Q6ZS49 121 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 LCNL1Q6ZST4 164 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 C8orf86Q6ZUL3 223 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 RNF152Q8N8N0 203 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 DRAXINQ8NBI3 349 aaPredicted RBP11.6□□□□□ -0.55
USP28-204ENST00000537642 KIAA1456Q9P272 454 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 ZNF221Q9UK13 617 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 ZNF580Q9UK33 172 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 WASHC3Q9Y3C0 194 aa11.6□□□□□ -0.55
USP28-204ENST00000537642 NUDT19A8MXV4 375 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 H7C2Y5 167 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 DIRAS3O95661 229 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 IGHG4P01861 327 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 PRB2P02812 416 aaPredicted RBP11.59□□□□□ -0.55
USP28-204ENST00000537642 ELANEP08246 267 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 VDAC1P21796 283 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 DTYMKP23919 212 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 FOXE3Q13461 319 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 ARL6IP1Q15041 203 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 LIN54Q6MZP7 749 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 LINC00482Q8N8I6 264 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 ZNF383Q8NA42 475 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 KLHL30-AS1Q8NEE0 82 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 OR5H6Q8NGV6 325 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 OR10J5Q8NHC4 309 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 OR51J1Q9H342 316 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 FBXL15Q9H469 300 aa11.59□□□□□ -0.55
USP28-204ENST00000537642 G3V318 75 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 M0R1X1 148 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 RRHO14718 337 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 ATP6V0E1O15342 81 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 RBBP9O75884 186 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 TFAP2AP05549 437 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 GSTP1P09211 210 aaKnown RBP11.58□□□□□ -0.56
USP28-204ENST00000537642 OR8U9P0C7N5 309 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 SLC6A1P30531 599 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 THBS3P49746 956 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 ZNF260Q3ZCT1 412 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 CXorf66Q5JRM2 361 aaPredicted RBP11.58□□□□□ -0.56
USP28-204ENST00000537642 HACD4Q5VWC8 232 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 ZNF695Q8IW36 515 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 MRPL41Q8IXM3 137 aaKnown RBP11.58□□□□□ -0.56
USP28-204ENST00000537642 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.58□□□□□ -0.56
USP28-204ENST00000537642 OR8U1Q8NH10 309 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 C5orf30Q96GV9 206 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 OR2D2Q9H210 308 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 PARP11Q9NR21 331 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 SDHAF2Q9NX18 166 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 RHBDL2Q9NX52 303 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 WSB1Q9Y6I7 421 aa11.58□□□□□ -0.56
USP28-204ENST00000537642 A0A087WXM4 84 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 TMEM235A6NFC5 223 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 SCGNO76038 276 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 TNFAIP8O95379 198 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 IGKV1-16P04430 117 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 OR5H8P0DN80 308 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 PSMB8P28062 276 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 PPIFP30405 207 aaKnown RBP11.57□□□□□ -0.56
USP28-204ENST00000537642 TGFBR1P36897 503 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 NDPQ00604 133 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 IDNKQ5T6J7 187 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 FOXB2Q5VYV0 432 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 H1FOOQ8IZA3 346 aaPredicted RBP11.57□□□□□ -0.56
USP28-204ENST00000537642 TSPAN14Q8NG11 270 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 NUDCD2Q8WVJ2 157 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 SLC25A38Q96DW6 304 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 YIPF6Q96EC8 236 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 RNF5Q99942 180 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 ST6GALNAC5Q9BVH7 336 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 GAB2Q9UQC2 676 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 FBXO7Q9Y3I1 522 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 ETV7Q9Y603 341 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 TGP01266 2768 aa11.57□□□□□ -0.56
USP28-204ENST00000537642 FCN1O00602 326 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 SSX5O60225 188 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 MYCNOSP40205 109 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 CDX1P47902 265 aaPredicted RBP11.56□□□□□ -0.56
USP28-204ENST00000537642 SCAND1P57086 179 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 CX3CL1P78423 397 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 PSG5Q15238 335 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 PDPNQ86YL7 162 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 RCC1LQ96I51 464 aaKnown RBP11.56□□□□□ -0.56
USP28-204ENST00000537642 RAX2Q96IS3 184 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 DUX3Q96PT4 197 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 P2RX4Q99571 388 aa11.56□□□□□ -0.56
USP28-204ENST00000537642 GINS4Q9BRT9 223 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms