RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 NIPBLQ6KC79 2804 aaeCLIP11.07□□□□□ -0.64
CD44-224ENST00000526669 TET2Q6N021 2002 aaPredicted RBP11.06□□□□□ -0.64
CD44-224ENST00000526669 IGHV1-3A0A0C4DH29 117 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 TNFSF12O43508 249 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 UPK1BO75841 260 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 GAPDHP04406 335 aaKnown RBP11.06□□□□□ -0.64
CD44-224ENST00000526669 CD24P25063 80 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 ZNF137PP52743 207 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 IFITM3Q01628 133 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 ZNF816Q0VGE8 651 aaPredicted RBP11.06□□□□□ -0.64
CD44-224ENST00000526669 AADACL3Q5VUY0 350 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 ZNF818PQ6ZRF7 136 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 ZNF833PQ6ZTB9 187 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 LHFPL1Q86WI0 220 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 DRAM1Q8N682 238 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 ZNF645Q8N7E2 425 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 DRAXINQ8NBI3 349 aaPredicted RBP11.06□□□□□ -0.64
CD44-224ENST00000526669 MARCH1Q8TCQ1 289 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 DUX5Q96PT3 197 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 TNCP24821 2201 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 JMJD1CQ15652 2540 aa11.06□□□□□ -0.64
CD44-224ENST00000526669 SETD2Q9BYW2 2564 aaPredicted RBP11.05□□□□□ -0.64
CD44-224ENST00000526669 TIMM23O14925 209 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 PLA2G10O15496 165 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 PROP1O75360 226 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 FAM157CP0CG43 387 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 PI3P19957 117 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 CCR6P51684 374 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 LY6EQ16553 131 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 LRRC75BQ2VPJ9 315 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 PHLDA2Q53GA4 152 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 FBLN7Q53RD9 439 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 IDO2Q6ZQW0 420 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 OR13C8Q8NGS7 320 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 MRGPRFQ96AM1 343 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 SSX3Q99909 188 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 NABP2Q9BQ15 211 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 MEGF9Q9H1U4 602 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 TBC1D24Q9ULP9 559 aa11.05□□□□□ -0.64
CD44-224ENST00000526669 H3BUX3 64 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 LYRM1O43325 122 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 IGLV2-14P01704 120 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 IGHV4-59P01825 116 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 CT45A6P0DMU7 189 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 CT45A5P0DMU8 189 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 CT45A7P0DMV0 189 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 SCGB2A2Q13296 93 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 OR2B11Q5JQS5 317 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 CCDC144NLQ6NUI1 221 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 OR8H3Q8N146 312 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.04□□□□□ -0.64
CD44-224ENST00000526669 TERB2Q8NHR7 220 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 CAPSLQ8WWF8 208 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 CFHR4Q92496 578 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 PRRT1Q99946 306 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 SCP2D1Q9UJQ7 156 aa11.04□□□□□ -0.64
CD44-224ENST00000526669 LINC00473A8K010 186 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 CENPXA8MT69 81 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 OOSP1A8MZH6 123 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 GPR31O00270 319 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 HOXA3O43365 443 aaPredicted RBP11.03□□□□□ -0.64
CD44-224ENST00000526669 SNRNP70P08621 437 aaKnown RBP11.03□□□□□ -0.64
CD44-224ENST00000526669 GNRHRP30968 328 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 BTCP35070 178 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 RPL30P62888 115 aaKnown RBP11.03□□□□□ -0.64
CD44-224ENST00000526669 SRSF2Q01130 221 aaKnown RBP11.03□□□□□ -0.64
CD44-224ENST00000526669 FAM71F2Q6NXP2 309 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 C16orf87Q6PH81 154 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 Q6YL49 198 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 ZNF383Q8NA42 475 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 FAM216AQ8WUB2 273 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 BORCS5Q969J3 196 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 C7orf50Q9BRJ6 194 aaKnown RBP11.03□□□□□ -0.64
CD44-224ENST00000526669 RSRP1Q9BUV0 290 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 SLC2A8Q9NY64 477 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 VSIG4Q9Y279 399 aa11.03□□□□□ -0.64
CD44-224ENST00000526669 NAP1L6A6NFF2 107 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 TXNL1O43396 289 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 SLC22A5O76082 557 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 DUTP33316 252 aaKnown RBP11.02□□□□□ -0.65
CD44-224ENST00000526669 ARHGDIBP52566 201 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 UCP3P55916 312 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 HES1Q14469 280 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 HNF4GQ14541 408 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 TUSC1Q2TAM9 212 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 RBMS3Q6XE24 437 aaKnown RBP11.02□□□□□ -0.65
CD44-224ENST00000526669 TMEM219Q86XT9 240 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 SLC38A6Q8IZM9 456 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 OR51H1Q8NH63 302 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 ZNF418Q8TF45 676 aaPredicted RBP11.02□□□□□ -0.65
CD44-224ENST00000526669 TCTEX1D2Q8WW35 142 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 GHITMQ9H3K2 345 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 ESM1Q9NQ30 184 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 GAB2Q9UQC2 676 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 NF1P21359 2839 aa11.02□□□□□ -0.65
CD44-224ENST00000526669 DNAJC9-AS1A6NH13 148 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 H0YJW9 148 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 H7C2Y5 167 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 VENTXO95231 258 aa11.01□□□□□ -0.65
CD44-224ENST00000526669 IGKV1D-33P01593 117 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms