RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 OR56B4Q8NH76 319 aa23.84■■□□□ 1.41
LIMCH1-211ENST00000509638 C5orf30Q96GV9 206 aa23.84■■□□□ 1.41
LIMCH1-211ENST00000509638 C2CD3Q4AC94 2353 aa23.84■■□□□ 1.41
LIMCH1-211ENST00000509638 DYNLT3P51808 116 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 BAK1Q16611 211 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 TRIQKQ629K1 86 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 MOB3BQ86TA1 216 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 ARRDC1Q8N5I2 433 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 ZNF645Q8N7E2 425 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 SECTM1Q8WVN6 248 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 CFHR4Q92496 578 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 DPAGT1Q9H3H5 408 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 SDHAF2Q9NX18 166 aa23.83■■□□□ 1.41
LIMCH1-211ENST00000509638 BTBD17A6NE02 478 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 KLF9Q13886 244 aaPredicted RBP23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 MEF2DQ14814 521 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 SLC9A3R2Q15599 337 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 MOB3AQ96BX8 217 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 JMJD8Q96S16 334 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 FXYD6Q9H0Q3 95 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 POMT1Q9Y6A1 747 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 AMY2AP04746 511 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 CD24P25063 80 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 BRS3P32247 399 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 AP3S2P59780 193 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 TOMM5Q8N4H5 51 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 ZDHHC22Q8N966 263 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 OR5R1Q8NH85 324 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 PIFOQ8TCI5 191 aa23.82■■□□□ 1.4
LIMCH1-211ENST00000509638 IGHV3-72A0A0B4J1Y9 119 aa23.81■■□□□ 1.4
LIMCH1-211ENST00000509638 M0R1X1 148 aa23.81■■□□□ 1.4
LIMCH1-211ENST00000509638 PROP1O75360 226 aa23.81■■□□□ 1.4
LIMCH1-211ENST00000509638 VENTXO95231 258 aa23.81■■□□□ 1.4
LIMCH1-211ENST00000509638 WDR12Q9GZL7 423 aaKnown RBP23.81■■□□□ 1.4
LIMCH1-211ENST00000509638 A0A0A6YYJ9 748 aa23.8■■□□□ 1.4
LIMCH1-211ENST00000509638 HABP2Q14520 560 aaPredicted RBP23.8■■□□□ 1.4
LIMCH1-211ENST00000509638 TMEM86BQ8N661 226 aa23.8■■□□□ 1.4
LIMCH1-211ENST00000509638 NABP2Q9BQ15 211 aa23.8■■□□□ 1.4
LIMCH1-211ENST00000509638 SLC5A7Q9GZV3 580 aa23.8■■□□□ 1.4
LIMCH1-211ENST00000509638 VPREB3Q9UKI3 123 aa23.8■■□□□ 1.4
LIMCH1-211ENST00000509638 IGLV2-14P01704 120 aa23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 IL7P13232 177 aa23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 INPP1P49441 399 aa23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 LSAMPQ13449 338 aa23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 LY6EQ16553 131 aa23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 ZNF57Q68EA5 555 aaPredicted RBP23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 DRAXINQ8NBI3 349 aaPredicted RBP23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 CHIAQ9BZP6 476 aa23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 GAB2Q9UQC2 676 aa23.79■■□□□ 1.4
LIMCH1-211ENST00000509638 OR5H14A6NHG9 310 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 SLC22A5O76082 557 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 SCGB2B2Q4G0G5 96 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 TCF19Q9Y242 345 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 ATRQ13535 2644 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 CLDN34H7C241 214 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 ZNF735P0CB33 412 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 CT45A6P0DMU7 189 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 CT45A5P0DMU8 189 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 CT45A7P0DMV0 189 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 SRSF2Q01130 221 aaKnown RBP23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 ZNF846Q147U1 533 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 FBLN7Q53RD9 439 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 AADACL3Q5VUY0 350 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 GLDNQ6ZMI3 551 aaPredicted RBP23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 CAPSLQ8WWF8 208 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 CCL28Q9NRJ3 127 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 MCUBQ9NWR8 336 aa23.78■■□□□ 1.4
LIMCH1-211ENST00000509638 DISC1C4P0D8 188 aa23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 SNRNP70P08621 437 aaKnown RBP23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 FAUP35544 74 aaKnown RBP23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 PPP5CP53041 499 aa23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 UBA52P62987 128 aaKnown RBP23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 LHFPL1Q86WI0 220 aa23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 PRIMA1Q86XR5 153 aa23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 CCDC32Q9BV29 185 aa23.77■■□□□ 1.4
LIMCH1-211ENST00000509638 IGKV1D-33P01593 117 aa23.76■■□□□ 1.39
LIMCH1-211ENST00000509638 IGKV1-33P01594 117 aa23.76■■□□□ 1.39
LIMCH1-211ENST00000509638 LINC00205P59089 165 aa23.76■■□□□ 1.39
LIMCH1-211ENST00000509638 TMEM219Q86XT9 240 aa23.76■■□□□ 1.39
LIMCH1-211ENST00000509638 CD40LGP29965 261 aa23.75■■□□□ 1.39
LIMCH1-211ENST00000509638 HES1Q14469 280 aa23.75■■□□□ 1.39
LIMCH1-211ENST00000509638 ZNF818PQ6ZRF7 136 aa23.75■■□□□ 1.39
LIMCH1-211ENST00000509638 OR51S1Q8NGJ8 323 aa23.75■■□□□ 1.39
LIMCH1-211ENST00000509638 RBMXL1Q96E39 390 aaKnown RBP23.75■■□□□ 1.39
LIMCH1-211ENST00000509638 HRASLSQ9HDD0 168 aa23.75■■□□□ 1.39
LIMCH1-211ENST00000509638 FAM90A9PA6NNJ1 464 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 CD1BP29016 333 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 ZNF383Q8NA42 475 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 DEDD2Q8WXF8 326 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 RNASE1P07998 156 aaKnown RBP23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 FAM106CPP0CH98 169 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 GNRHRP30968 328 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 MSMO1Q15800 293 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 TERB2Q8NHR7 220 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 PRRT1Q99946 306 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 PITPNC1Q9UKF7 332 aa23.74■■□□□ 1.39
LIMCH1-211ENST00000509638 A6NDX4 124 aa23.73■■□□□ 1.39
LIMCH1-211ENST00000509638 H0YJW9 148 aa23.73■■□□□ 1.39
LIMCH1-211ENST00000509638 TNFSF12O43508 249 aa23.73■■□□□ 1.39
LIMCH1-211ENST00000509638 DUTP33316 252 aaKnown RBP23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms