RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 EREGO14944 169 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 DIRAS3O95661 229 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 LY86O95711 162 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 APOA2P02652 100 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 HSPB1P04792 205 aaKnown RBP5.5□□□□□ -1.53
VPS41-208ENST00000448833 OR8U9P0C7N5 309 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 CPEP16870 476 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 CHRNA7P36544 502 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 OR3A3P47888 321 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 LGALS7P47929 136 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 LUMP51884 338 aaPredicted RBP5.5□□□□□ -1.53
VPS41-208ENST00000448833 CX3CL1P78423 397 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 TPBGQ13641 420 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 GNMTQ14749 295 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 ARL6IP1Q15041 203 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 C4orf46Q504U0 113 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 ACTBL2Q562R1 376 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 FAM53AQ6NSI3 398 aaPredicted RBP5.5□□□□□ -1.53
VPS41-208ENST00000448833 FAM131AQ6UXB0 335 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 LRRTM1Q86UE6 522 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 PPP1R27Q86WC6 154 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 PDPNQ86YL7 162 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 SVOPQ8N4V2 548 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.5□□□□□ -1.53
VPS41-208ENST00000448833 OR5AN1Q8NGI8 311 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 ABHD5Q8WTS1 349 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 PTX4Q96A99 478 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 OR4C12Q96R67 309 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 KLK15Q9H2R5 256 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 IFI27L2Q9H2X8 130 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 VCX3BQ9H321 246 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 ACOT13Q9NPJ3 140 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 C12orf4Q9NQ89 552 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 GAB2Q9UQC2 676 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 NUBP2Q9Y5Y2 271 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 TRDCB7Z8K6 153 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 H0YJW9 148 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 PDCD5O14737 125 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 SAP30O75446 220 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 LGALS1P09382 135 aaKnown RBP5.49□□□□□ -1.53
VPS41-208ENST00000448833 CT45A6P0DMU7 189 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 CT45A5P0DMU8 189 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 CT45A7P0DMV0 189 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 RRASP10301 218 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 ZP3P21754 424 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 AADACP22760 399 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 GADD45AP24522 165 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 HLA-DRB3P79483 266 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 QRFPP83859 136 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 PITPNAQ00169 270 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 UNC119Q13432 240 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 KIAA0141Q14154 515 aaPredicted RBP5.49□□□□□ -1.53
VPS41-208ENST00000448833 P2RY14Q15391 338 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 RAB11BQ15907 218 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 TATDN3Q17R31 274 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 ECSCRQ19T08 205 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 LCE2CQ5TA81 110 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 LIPKQ5VXJ0 399 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 OR10K2Q6IF99 312 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 LAIR2Q6ISS4 152 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 UNQ5815/PRO19632Q6UWF5 114 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 OR4A4PQ8NGN8 299 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 OR10J5Q8NHC4 309 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 DCUN1D4Q92564 292 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 PRR25Q96S07 402 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 CMSS1Q9BQ75 279 aaKnown RBP5.49□□□□□ -1.53
VPS41-208ENST00000448833 AGMATQ9BSE5 352 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 TOLLIPQ9H0E2 274 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 C11orf54Q9H0W9 315 aaPredicted RBP5.49□□□□□ -1.53
VPS41-208ENST00000448833 LPAR5Q9H1C0 372 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 ZMAT4Q9H898 229 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 GNB4Q9HAV0 340 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 RANGRFQ9HD47 186 aaPredicted RBP5.49□□□□□ -1.53
VPS41-208ENST00000448833 Q9N2K0 584 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 METTL1Q9UBP6 276 aaKnown RBP5.49□□□□□ -1.53
VPS41-208ENST00000448833 RAB22AQ9UL26 194 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 V9GY05 133 aa5.49□□□□□ -1.53
VPS41-208ENST00000448833 C13orf42A0A1B0GVH6 325 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 METTL21EPA6NDL7 271 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 SOCS1O15524 211 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 DENRO43583 198 aaKnown RBP5.48□□□□□ -1.53
VPS41-208ENST00000448833 RGS10O43665 173 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 CNIH1O95406 144 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 BRI3O95415 125 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 CD3GP09693 182 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 HSMCR30P0CW71 290 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 CNTFRP26992 372 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 VEGFCP49767 419 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 TPPP2P59282 170 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 RPS16P62249 146 aaKnown RBP5.48□□□□□ -1.53
VPS41-208ENST00000448833 GNB1P62873 340 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 MLLT11Q13015 90 aaPredicted RBP5.48□□□□□ -1.53
VPS41-208ENST00000448833 PSG5Q15238 335 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 SSX1Q16384 188 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 SRSF7Q16629 238 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS41-208ENST00000448833 RPL39P5Q59GN2 51 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 C19orf54Q5BKX5 351 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 FAM209BQ5JX69 171 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 ACSM6Q6P461 480 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 DLX4Q92988 240 aaPredicted RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms