RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CEACAM3P40198 252 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 RND3P61587 244 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 PAX2Q02962 417 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 CT45A1Q5HYN5 189 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 ZNF66Q6ZN08 573 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 Q6ZNX1 250 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 MAPK1IP1LQ8NDC0 245 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 BEND2Q8NDZ0 799 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 BVESQ8NE79 360 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 CT45A3Q8NHU0 189 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 COQ8AQ8NI60 647 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 C1orf159Q96HA4 380 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 HSD17B10Q99714 261 aaKnown RBP11.61□□□□□ -0.55
SKA1-202ENST00000398452 RTBDNQ9BSG5 229 aaPredicted RBP11.61□□□□□ -0.55
SKA1-202ENST00000398452 PARP12Q9H0J9 701 aaKnown RBP11.61□□□□□ -0.55
SKA1-202ENST00000398452 SIRPDQ9H106 197 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 C7orf69Q9H7B7 122 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 LIN7CQ9NUP9 197 aaKnown RBP11.61□□□□□ -0.55
SKA1-202ENST00000398452 NIPBLQ6KC79 2804 aaeCLIP11.61□□□□□ -0.55
SKA1-202ENST00000398452 M0R1X1 148 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 SMAD7O15105 426 aaKnown RBP11.6□□□□□ -0.55
SKA1-202ENST00000398452 SLC31A2O15432 143 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 MPPED1O15442 326 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 TNFSF12O43508 249 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 SSNA1O43805 119 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 IFNA2P01563 188 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 EPHA1P21709 976 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 MECP2P51608 486 aaKnown RBP11.6□□□□□ -0.55
SKA1-202ENST00000398452 ARHGDIBP52566 201 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 PAX8Q06710 450 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 HLA-DRB5Q30154 266 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 FAM53AQ6NSI3 398 aaPredicted RBP11.6□□□□□ -0.55
SKA1-202ENST00000398452 GLDNQ6ZMI3 551 aaPredicted RBP11.6□□□□□ -0.55
SKA1-202ENST00000398452 KCTD9Q7L273 389 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 TBC1D26Q86UD7 250 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 KRTAP1-3Q8IUG1 177 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 C11orf42Q8N5U0 333 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 DRAM1Q8N682 238 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 Q8N7P7 452 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 ADAD2Q8NCV1 583 aaKnown RBP11.6□□□□□ -0.55
SKA1-202ENST00000398452 ZNF439Q8NDP4 499 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 CASTOR1Q8WTX7 329 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 TCTEX1D2Q8WW35 142 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 MRGPRFQ96AM1 343 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 ADTRPQ96IZ2 230 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 PHB2Q99623 299 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 IFI27L2Q9H2X8 130 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 NAA60Q9H7X0 242 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 UNKLQ9H9P5 680 aaKnown RBP11.6□□□□□ -0.55
SKA1-202ENST00000398452 SDHAF2Q9NX18 166 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 GAB2Q9UQC2 676 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 PRELID3BQ9Y3B1 194 aa11.6□□□□□ -0.55
SKA1-202ENST00000398452 DSCAML1Q8TD84 2053 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 ZNF469Q96JG9 3925 aaPredicted RBP11.59□□□□□ -0.55
SKA1-202ENST00000398452 hCG_2014768A0A024R1R8 64 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 A0A096LNT2 108 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 CRYM-AS1A6NIL9 109 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 SNRPGP15A8MWD9 76 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 LEUTXA8MZ59 168 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 IGHV4-31P0DP07 118 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 HTR1DP28221 377 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 ZNF134P52741 427 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 SRPXP78539 464 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 DHODHQ02127 395 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 GPR157Q5UAW9 335 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 FAM71F2Q6NXP2 309 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 LYG2Q86SG7 212 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 TEX29Q8N6K0 151 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 UXS1Q8NBZ7 420 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 OR51H1Q8NH63 302 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 ZNF431Q8TF32 576 aaPredicted RBP11.59□□□□□ -0.55
SKA1-202ENST00000398452 CAPSLQ8WWF8 208 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 LHX4Q969G2 390 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 RPEQ96AT9 228 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 MSI2Q96DH6 328 aaKnown RBP11.59□□□□□ -0.55
SKA1-202ENST00000398452 C18orf12Q96KH6 178 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 AGMATQ9BSE5 352 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 ALG5Q9Y673 324 aa11.59□□□□□ -0.55
SKA1-202ENST00000398452 CSPG4Q6UVK1 2322 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 SAA2-SAA4A0A096LPE2 208 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 C3orf85A0A1B0GTC6 90 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 C9orf170A2RU37 121 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 TXNL1O43396 289 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 PGLYRP1O75594 196 aaPredicted RBP11.58□□□□□ -0.56
SKA1-202ENST00000398452 SFT2D2O95562 160 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 APOA2P02652 100 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 SERPINE2P07093 398 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 SAA2P0DJI9 122 aaPredicted RBP11.58□□□□□ -0.56
SKA1-202ENST00000398452 FOSL1P15407 271 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 KIR2DS2P43631 304 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 THBS3P49746 956 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 UBE2E1P51965 193 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 DHRS2Q13268 280 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 PPP1R1AQ13522 171 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 SLC9A3R2Q15599 337 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 CLEC9AQ6UXN8 241 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 TGIF2LXQ8IUE1 241 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 PDZD9Q8IXQ8 264 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 TCTEX1D1Q8N7M0 179 aa11.58□□□□□ -0.56
SKA1-202ENST00000398452 OR11H6Q8NGC7 330 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms