RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 PITX3O75364 302 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 BCL2L2Q92843 193 aaPredicted RBP11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 LHX4Q969G2 390 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 GALMQ96C23 342 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 SLC39A9Q9NUM3 307 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 C21orf140B9A014 251 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 SPRY3O43610 288 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 IGKV1-39P01597 117 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 MT-ND4LP03901 98 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 IGKV1D-39P04432 117 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 ZNF324BQ6AW86 544 aaPredicted RBP11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 TMEM56Q96MV1 263 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 OR4C12Q96R67 309 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 DDA1Q9BW61 102 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 POLDIP2Q9Y2S7 368 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 TMEM56-RWDD3S4R434 201 aa11.55□□□□□ -0.56
PRPF40B-209ENST00000548825 H0Y980 276 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 IGKV1-5P01602 117 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 ACAA1P09110 424 aaPredicted RBP11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 LRTM2Q8N967 370 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 RNF122Q9H9V4 155 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 PCSK5Q92824 1860 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 LRP5LA4QPB2 252 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 S1PR2O95136 353 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 PAX9P55771 341 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 RPS23P62266 143 aaKnown RBP11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 WDR25Q64LD2 544 aaPredicted RBP11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 GNPNAT1Q96EK6 184 aaPredicted RBP11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 LINC00470Q9BZP3 86 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 PLXNB1O43157 2135 aa11.54□□□□□ -0.56
PRPF40B-209ENST00000548825 ID3Q02535 119 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 NCOR2Q9Y618 2525 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 COL12A1Q99715 3063 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 C12orf77C9JDV5 145 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 LINC01387J3KSC0 135 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 ZG16O60844 167 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 HBZP02008 142 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 COL8A2P25067 703 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 RAB5CP51148 216 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 RPL30P62888 115 aaKnown RBP11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 SLC38A11Q08AI6 406 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 RHEBQ15382 184 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 C15orf54Q8N8G6 183 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 GATAD1Q8WUU5 269 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 C17orf98A8MV24 154 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 M0R1B8 84 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 FCGR3BO75015 233 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 SCAF4O95104 1147 aaKnown RBP11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 SELLP14151 372 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 SPSB3Q6PJ21 355 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 H1FOOQ8IZA3 346 aaPredicted RBP11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 ZNF561Q8N587 486 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 OR5D13Q8NGL4 314 aa11.53□□□□□ -0.56
PRPF40B-209ENST00000548825 FAM157AC9JC47 383 aa11.52□□□□□ -0.56
PRPF40B-209ENST00000548825 C10orf91Q5T1B1 145 aa11.52□□□□□ -0.56
PRPF40B-209ENST00000548825 ZNF610Q8N9Z0 462 aa11.52□□□□□ -0.56
PRPF40B-209ENST00000548825 ZNRF1Q8ND25 227 aa11.52□□□□□ -0.56
PRPF40B-209ENST00000548825 LRRC29Q8WV35 223 aa11.52□□□□□ -0.56
PRPF40B-209ENST00000548825 PLSCR2Q9NRY7 297 aa11.52□□□□□ -0.56
PRPF40B-209ENST00000548825 C19orf67A6NJJ6 358 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 PTBP3O95758 552 aaKnown RBP11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 WT1P19544 449 aaPredicted RBP11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 CD200P41217 278 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 HOXA1P49639 335 aaPredicted RBP11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 TAS2R30P59541 319 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 HBG1P69891 147 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 HBG2P69892 147 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 COL10A1Q03692 680 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 CST9LP1Q5W188 147 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 Q6ZSR3 168 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 SSX7Q7RTT5 188 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 H2BFWTQ7Z2G1 175 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 LRP11Q86VZ4 500 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 ODF3L1Q8IXM7 274 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 C9orf106Q8NAJ2 232 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 CHD8Q9HCK8 2581 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 MAP1LC3B2A6NCE7 125 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 DFFBO76075 338 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 IFNA10P01566 189 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 CRYAAP02489 173 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 TRGC2P03986 189 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 IL24Q13007 206 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 HMGN3Q15651 99 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 LFNGQ8NES3 379 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 MAP1LC3BQ9GZQ8 125 aa11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 LIN7CQ9NUP9 197 aaKnown RBP11.52□□□□□ -0.57
PRPF40B-209ENST00000548825 TRAV20A0A0B4J274 112 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 CXCL1P09341 107 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 KRTAP27-1Q3LI81 207 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 RIMS4Q9H426 269 aaPredicted RBP11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 TNRC6AQ8NDV7 1962 aaKnown RBP11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 SNRPCP09234 159 aaKnown RBP11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 FGF7P21781 194 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 ICAM4Q14773 271 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 GFI1BQ5VTD9 330 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 Q6P435 159 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 FAM214BQ7L5A3 538 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 RPRMLQ8N4K4 120 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 ZNF709Q8N972 641 aa11.51□□□□□ -0.57
PRPF40B-209ENST00000548825 OR13A1Q8NGR1 328 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms