RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 SPIN2AQ99865 258 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 SPIN2BQ9BPZ2 258 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 TMPRSS13Q9BYE2 586 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 GAL3ST2Q9H3Q3 398 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 ZFP57Q9NU63 452 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 LIN7CQ9NUP9 197 aaKnown RBP7.03□□□□□ -1.28
VAPB-206ENST00000520497 RDH8Q9NYR8 311 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 TAS2R3Q9NYW6 316 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 CALYQ9NYX4 217 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 OR1A1Q9P1Q5 309 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 JPT1Q9UK76 154 aa7.03□□□□□ -1.28
VAPB-206ENST00000520497 UBE2J1Q9Y385 318 aaPredicted RBP7.03□□□□□ -1.28
VAPB-206ENST00000520497 CSPG4Q6UVK1 2322 aa7.02□□□□□ -1.28
VAPB-206ENST00000520497 C3orf85A0A1B0GTC6 90 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 KBTBD11-OT1A0A1B0GTJ5 212 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 C13orf42A0A1B0GVH6 325 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 DUXBA0A1W2PPF3 345 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 A0A1W2PPH5 198 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 MEX3AA1L020 520 aaKnown RBP7.02□□□□□ -1.29
VAPB-206ENST00000520497 MPPED1O15442 326 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 PHF1O43189 567 aaPredicted RBP7.02□□□□□ -1.29
VAPB-206ENST00000520497 ATG12O94817 140 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 NUP62P37198 522 aaPredicted RBP7.02□□□□□ -1.29
VAPB-206ENST00000520497 DLX6P56179 175 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 LOXL3P58215 753 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 LMO4P61968 165 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 SRSF4Q08170 494 aaKnown RBP7.02□□□□□ -1.29
VAPB-206ENST00000520497 CATR1Q13166 79 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 SMCO1Q147U7 214 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 TMEM200BQ69YZ2 307 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 LDLRAD3Q86YD5 345 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 LRRC75A-AS1Q8N1F1 130 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 THAP6Q8TBB0 222 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 FAM168AQ92567 244 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 MBD6Q96DN6 1003 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 PERPQ96FX8 193 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 PIMREGQ9BSJ6 248 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 OR2S2Q9NQN1 319 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 BEX4Q9NWD9 120 aaPredicted RBP7.02□□□□□ -1.29
VAPB-206ENST00000520497 GNG12Q9UBI6 72 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 CLN8Q9UBY8 286 aa7.02□□□□□ -1.29
VAPB-206ENST00000520497 IGKV1D-13A0A0B4J2D9 117 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 KIAA1324LA8MWY0 1029 aaPredicted RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 A8MXK9 166 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 C22orf46C9J442 243 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 H0Y980 276 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 HSD17B6O14756 317 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 IGKV1-13P0DP09 117 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 RAB7AP51149 207 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 SUPT4H1P63272 117 aaKnown RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 GNMTQ14749 295 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 DEFB113Q30KQ7 82 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 ESCO2Q56NI9 601 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 THOC7Q6I9Y2 204 aaKnown RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 CLEC2AQ6UVW9 174 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 HEPN1Q6WQI6 88 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 LIAT1Q6ZQX7 453 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 TBC1D26Q86UD7 250 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 ZNF695Q8IW36 515 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 ZNF645Q8N7E2 425 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 TCTEX1D1Q8N7M0 179 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 LY6G5BQ8NDX9 201 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 BVESQ8NE79 360 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 OR10A7Q8NGE5 316 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 OR52L2PQ8NGH6 319 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 OR52M1Q8NGK5 317 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 CLDND2Q8NHS1 167 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 RNASE11Q8TAA1 199 aaKnown RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 RFESDQ8TAC1 157 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 H1FXQ92522 213 aaKnown RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 ZNF714Q96N38 554 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 SSBP3Q9BWW4 388 aaPredicted RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 NMES1Q9C002 83 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 PARP12Q9H0J9 701 aaKnown RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 NARFLQ9H6Q4 476 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 RPUSD1Q9UJJ7 312 aaKnown RBP7.01□□□□□ -1.29
VAPB-206ENST00000520497 TMED3Q9Y3Q3 217 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 TNCP24821 2201 aa7.01□□□□□ -1.29
VAPB-206ENST00000520497 FLNAP21333 2647 aaKnown RBP7□□□□□ -1.29
VAPB-206ENST00000520497 TET2Q6N021 2002 aaPredicted RBP7□□□□□ -1.29
VAPB-206ENST00000520497 CELSR1Q9NYQ6 3014 aa7□□□□□ -1.29
VAPB-206ENST00000520497 IGHV4-30-2A0A087WSY4 118 aa7□□□□□ -1.29
VAPB-206ENST00000520497 FXYD6-FXYD2A0A087WZ82 144 aa7□□□□□ -1.29
VAPB-206ENST00000520497 A0A096LNT2 108 aa7□□□□□ -1.29
VAPB-206ENST00000520497 IGHV3-43A0A0B4J1X8 118 aa7□□□□□ -1.29
VAPB-206ENST00000520497 DBX1A6NMT0 343 aa7□□□□□ -1.29
VAPB-206ENST00000520497 HMSDA8MTL9 139 aa7□□□□□ -1.29
VAPB-206ENST00000520497 C17orf98A8MV24 154 aa7□□□□□ -1.29
VAPB-206ENST00000520497 L7N2F9 121 aa7□□□□□ -1.29
VAPB-206ENST00000520497 ITGB1BP1O14713 200 aa7□□□□□ -1.29
VAPB-206ENST00000520497 YPEL1O60688 119 aa7□□□□□ -1.29
VAPB-206ENST00000520497 MMP23AO75900 390 aa7□□□□□ -1.29
VAPB-206ENST00000520497 SIX6O95475 246 aa7□□□□□ -1.29
VAPB-206ENST00000520497 RBP4P02753 201 aa7□□□□□ -1.29
VAPB-206ENST00000520497 RLN2P04090 185 aa7□□□□□ -1.29
VAPB-206ENST00000520497 SERPINE2P07093 398 aa7□□□□□ -1.29
VAPB-206ENST00000520497 OR5AC1P0C628 307 aa7□□□□□ -1.29
VAPB-206ENST00000520497 OR8U9P0C7N5 309 aa7□□□□□ -1.29
VAPB-206ENST00000520497 IGHV3-43DP0DP04 118 aa7□□□□□ -1.29
VAPB-206ENST00000520497 CCL3L1P16619 93 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms