RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 IGHG1P01857 330 aa11.77□□□□□ -0.53
HDAC1-206ENST00000476391 PMCHP20382 165 aa11.77□□□□□ -0.53
HDAC1-206ENST00000476391 COX5AP20674 150 aa11.77□□□□□ -0.53
HDAC1-206ENST00000476391 RPS21P63220 83 aaKnown RBP11.77□□□□□ -0.53
HDAC1-206ENST00000476391 MALLQ13021 153 aa11.77□□□□□ -0.53
HDAC1-206ENST00000476391 KRTCAP3Q53RY4 240 aa11.77□□□□□ -0.53
HDAC1-206ENST00000476391 BRICD5Q6PL45 260 aa11.77□□□□□ -0.53
HDAC1-206ENST00000476391 CLUHP3Q96NS8 147 aa11.77□□□□□ -0.53
HDAC1-206ENST00000476391 THADAQ6YHU6 1953 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 C5orf63A6NC05 138 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 NAPSAO96009 420 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 CDAP32320 146 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 LGALS4P56470 323 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 SLC38A11Q08AI6 406 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 AMMECR1LQ6DCA0 310 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 PRSS57Q6UWY2 283 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 ZNF114Q8NC26 417 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 ZNF501Q96CX3 271 aaPredicted RBP11.76□□□□□ -0.53
HDAC1-206ENST00000476391 STRADBQ9C0K7 418 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 SLC22A20A6NK97 555 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 SPRY1O43609 319 aaPredicted RBP11.76□□□□□ -0.53
HDAC1-206ENST00000476391 CA2P00918 260 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 IAPPP10997 89 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 F2RP25116 425 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 IER3P46695 156 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 CDC34P49427 236 aaPredicted RBP11.76□□□□□ -0.53
HDAC1-206ENST00000476391 NHLH1Q02575 133 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 SRSF7Q16629 238 aaKnown RBP eCLIP11.76□□□□□ -0.53
HDAC1-206ENST00000476391 VASH2Q86V25 355 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 OSR2Q8N2R0 312 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 LSM10Q969L4 123 aaKnown RBP11.76□□□□□ -0.53
HDAC1-206ENST00000476391 TXNDC17Q9BRA2 123 aa11.76□□□□□ -0.53
HDAC1-206ENST00000476391 ARHGAP21Q5T5U3 1957 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 ODAMA1E959 279 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 OR2T8A6NH00 312 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 S100GP29377 79 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 SRD5A2P31213 254 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 PAX2Q02962 417 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 TMEM249Q2WGJ8 235 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 PIGYQ3MUY2 71 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 COX19Q49B96 90 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 TRIM61Q5EBN2 209 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 KIAA0895LQ68EN5 471 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 SLC25A47Q6Q0C1 308 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.75□□□□□ -0.535e-7■■■■■ 32.6
HDAC1-206ENST00000476391 OR10P1Q8NGE3 313 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 QTRT1Q9BXR0 403 aaKnown RBP11.75□□□□□ -0.53
HDAC1-206ENST00000476391 FBRSQ9HAH7 460 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 LOC102724200A0A096LPH7 203 aaPredicted RBP11.75□□□□□ -0.53
HDAC1-206ENST00000476391 H0YJW9 148 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 PGLYRP1O75594 196 aaPredicted RBP11.75□□□□□ -0.53
HDAC1-206ENST00000476391 TUSC2O75896 110 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 RBPJQ06330 500 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 MFAP5Q13361 173 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 CST6Q15828 149 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 HIST3H3Q16695 136 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 WDR73Q6P4I2 378 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 GPHA2Q96T91 129 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 DERL1Q9BUN8 251 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 CD207Q9UJ71 328 aa11.75□□□□□ -0.53
HDAC1-206ENST00000476391 SPAG17Q6Q759 2223 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 G3V4G9 280 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 TNFP01375 233 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 EGR1P18146 543 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 DEFB110Q30KQ9 67 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 ZNF324BQ6AW86 544 aaPredicted RBP11.74□□□□□ -0.53
HDAC1-206ENST00000476391 SFTPA1Q8IWL2 248 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 BATF2Q8N1L9 274 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 APOBEC3DQ96AK3 386 aaPredicted RBP11.74□□□□□ -0.53
HDAC1-206ENST00000476391 ZNF442Q9H7R0 627 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 CCL28Q9NRJ3 127 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 HRASLS2Q9NWW9 162 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 ALKBH4Q9NXW9 302 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 NOTCH4Q99466 2003 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 IGKV1D-13A0A0B4J2D9 117 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 PGPEP1LA6NFU8 196 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 CD300LBA8K4G0 201 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 SERPINE2P07093 398 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 IGKV1-13P0DP09 117 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 IGLL1P15814 213 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 CNN3Q15417 329 aaKnown RBP11.74□□□□□ -0.53
HDAC1-206ENST00000476391 MPV17L2Q567V2 206 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 SPANXN5Q5MJ07 72 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 Q6ZRM9 215 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 OOSP2Q86WS3 158 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 ATOH7Q8N100 152 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 FAM58AQ8N1B3 248 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 CCL4L1Q8NHW4 92 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 RCHY1Q96PM5 261 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 CLEC7AQ9BXN2 247 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 CACNG5Q9UF02 275 aa11.74□□□□□ -0.53
HDAC1-206ENST00000476391 TRBV20OR9-2A0A075B6H5 130 aa11.73□□□□□ -0.53
HDAC1-206ENST00000476391 A0A1W2PP55 124 aa11.73□□□□□ -0.53
HDAC1-206ENST00000476391 AHRRA9YTQ3 701 aa11.73□□□□□ -0.53
HDAC1-206ENST00000476391 HNRNPA2B1P22626 353 aaKnown RBP11.73□□□□□ -0.53
HDAC1-206ENST00000476391 PLCXD2Q0VAA5 305 aa11.73□□□□□ -0.53
HDAC1-206ENST00000476391 DCAF12Q5T6F0 453 aa11.73□□□□□ -0.53
HDAC1-206ENST00000476391 TMEM14EPQ6UXP3 125 aa11.73□□□□□ -0.53
HDAC1-206ENST00000476391 C12orf54Q6X4T0 127 aa11.73□□□□□ -0.53
HDAC1-206ENST00000476391 ERASQ7Z444 233 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms